RnoALTA0032927-2/7 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7119266-7120012:+
Coord C1 exon
chr3:7119266-7119459
Coord A exon
chr3:7119953-7119979
Coord C2 exon
chr3:7119980-7120012
Length
27 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCCCTCACGGCCTCCTCTAGATA
3' ss Score
5.41
Exon sequences
Seq C1 exon
TGCGAGAATGAGTCAGCTCTGAACCTCTACGAGACTTGCAAGGTGCGCACGGTGAAGGCCGGTACTCTGGAGAAGCTGGTGGAACACCTGGTGCCTGCCTTCCAGGGCAGTGACCTTTCCTACGTCACCGTATTCCTGTGCACCTACAGAGCCTTCACAACCACTCAGCAGGTGCTAGACCTGCTGTTCAAAAG
Seq A exon
ATATGGCTGCATCCTTCCCTACTCCAG
Seq C2 exon
TGAGGACGGCGGACCACAGGACCAACTCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219-8-9,8-8,8-7,8-6,8-5,8-4,8-3-2/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(47.5=73.8)
A:
NA
C2:
PF0061815=RasGEF_N=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGGGCAGTGACCTTTC
R:
TTTGAGTTGGTCCTGTGGTCC
Band lengths:
127-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]