BtaALTA0024549-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63408698-63409171:-
Coord C1 exon
chr17:63409107-63409171
Coord A exon
chr17:63408811-63408871
Coord C2 exon
chr17:63408698-63408810
Length
61 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ATGGTCCCCCCTGCCCCCAGCTC
3' ss Score
8.9
Exon sequences
Seq C1 exon
CTGACCCCAACACCCTCTTCCGTTCTAACTCCCTGGCGTCCAAGTCAGTGGAGCAGTTTATGAAG
Seq A exon
CTCATGGGCACACCACGGCCTCACCCTCAGCCCCACCCCGTGTGGTGCCCCCTGCCCCCAG
Seq C2 exon
CTCGTGGGCATGCCCTATCTGCATGAGGTCCTAAGGCCAGTGATCAACCGCGTCTTCGAGGAGAGGAAGTACATGGAGCTGGATCCCTGCAAGATGGACCTGGGCCGCACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739-15-14,15-13,15-12-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(11.1=100)
A:
NA
C2:
PF0061614=RasGAP=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAACTCCCTGGCGTCCAA
R:
CATCTTGCAGGGATCCAGCTC
Band lengths:
139-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development