BtaINT0122595 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63408698-63409171:-
Coord C1 exon
chr17:63409107-63409171
Coord A exon
chr17:63408811-63409106
Coord C2 exon
chr17:63408698-63408810
Length
296 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTGGTGCCCCCTGCCCCCAGCTC
3' ss Score
8.91
Exon sequences
Seq C1 exon
CTGACCCCAACACCCTCTTCCGTTCTAACTCCCTGGCGTCCAAGTCAGTGGAGCAGTTTATGAAG
Seq A exon
GTGAGTAGGTGAAGGCCTGGGGGGCTGGTGGGCAGTCCGGCGGCTGCTTCCTCATGGGGACTCCCTTCCCGGTGCTTACTTGGAGCCCAGAGCTTGGCCGGCCTCAGGTGGCCCTGGGCAGCCGAGCTGGGGGGCTGCTGGCTGGCCTCACCCTGAGTTGCACCCCAACCCCAGCCCAGAGGCAGGTCTCCACCTCTCTCTGAACCTCTCCCTGCATGGTCCCCCCTGCCCCCAGCTCATGGGCACACCACGGCCTCACCCTCAGCCCCACCCCGTGTGGTGCCCCCTGCCCCCAG
Seq C2 exon
CTCGTGGGCATGCCCTATCTGCATGAGGTCCTAAGGCCAGTGATCAACCGCGTCTTCGAGGAGAGGAAGTACATGGAGCTGGATCCCTGCAAGATGGACCTGGGCCGCACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739:ENSBTAT00000022254:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(11.1=100)
A:
NA
C2:
PF0061614=RasGAP=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCCCAACACCCTCTTCC
R:
CGGCCCAGGTCCATCTTG
Band lengths:
172-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development