MmuINT0132014 @ mm10
Intron Retention
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:120664446-120664858:+
Coord C1 exon
chr5:120664446-120664510
Coord A exon
chr5:120664511-120664745
Coord C2 exon
chr5:120664746-120664858
Length
235 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CGTGTGGCCCCTGCCCTCAGCTC
3' ss Score
8.1
Exon sequences
Seq C1 exon
ATGACCCCAACACCCTCTTCCGTTCTAACTCCTTGGCATCCAAGTCGATGGAACAGTTCATGAAG
Seq A exon
GTGAGTGGGTGCAAGCGGCTTCCTCCCCTGCTGCTCACCGGGGCCTCAGAGCCTGCTGGTCCCAAGTGGCATTAGGTGGCTGAGTTGGGTGATGGTGGCAGGTGCCTCGCTTCAGCCCTGGGCGGCACCCTTGGACACAGCTGGCCTAGCTCTGAAATCTCCCTGCACACCCCCCTGCCCCAGCCCAGGGTGTTCCCTGCCACCCTTAGCCGCTCCGTGTGGCCCCTGCCCTCAG
Seq C2 exon
CTCGTGGGCATGCGCTACCTGCACGAGGTCCTGAGGCCAGTGATCAGCCGCGTCTTCGAGGAGAAGAAATATATGGAACTGGACCCTTGCAAGATGGACCTGAACCGCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602:ENSMUST00000031606:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(11.1=100)
A:
NA
C2:
PF0061614=RasGAP=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACCCCAACACCCTCTTCC
R:
GAGCGGTTCAGGTCCATCTTG
Band lengths:
175-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types