GgaINT0006282 @ galGal3
Intron Retention
Gene
ENSGALG00000008150 | RASAL1
Description
NA
Coordinates
chr15:11514147-11514530:-
Coord C1 exon
chr15:11514368-11514530
Coord A exon
chr15:11514260-11514367
Coord C2 exon
chr15:11514147-11514259
Length
108 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGACCTCCTGCCCCATGCAGGCA
3' ss Score
9.17
Exon sequences
Seq C1 exon
CCCCGAGGGCTGCCAGGGTGATCCAGAGCCTGCTGTGAGGTTGGGCACACCGAGGACATCTGGGGCACCCCCATGGCTCACGGTGGGCTCCCTCCCAGCGGACCCCAATACCCTTTTCCGCTCCAACTCTTTGGCCTCCAAGTCCGTGGAGCAGTTTTTGAAG
Seq A exon
GTGAGCCCGGGAGGGGACGTCACTGCAGCACCCTGCGATGGCCTCAGGGCATGGCGCAGCGCTGGGGACAGCATGGGGACAGCGGTGGTGACCTCCTGCCCCATGCAG
Seq C2 exon
GCAGTGGGGCTGCCCTACCTGCACGCGGTCCTGAAGCCGGTGGTGAACCGCATCTTCGAGGAGAAGAAGTACGTGGAGTTGGACCCCTGCAAGATGGAGCTGAGCCGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150:ENSGALT00000013239:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.436 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(14.3=47.3)
A:
NA
C2:
PF0061614=RasGAP=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCCAGAGCCTGCTGTGA
R:
CATCTTGCAGGGGTCCAACTC
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]