HsaINT0137684 @ hg19
Intron Retention
Gene
ENSG00000111344 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:9873]
Coordinates
chr12:113552605-113553069:-
Coord C1 exon
chr12:113553005-113553069
Coord A exon
chr12:113552718-113553004
Coord C2 exon
chr12:113552605-113552717
Length
287 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTGGTGCCCCCTGCCCCCAGCTC
3' ss Score
8.91
Exon sequences
Seq C1 exon
TGGACCCCAACACCCTCTTCCGTTCTAACTCCCTGGCATCCAAGTCGATGGAACAGTTTATGAAG
Seq A exon
GTGAGTAGGTGAAGGCCTGCGGGACCAGGCGCAGCTTCCTCGGGTACCTCCTTCCCAGTGCCTACCTGGCTCCCTCACTTAGCTGGCTTCAGACAGCACTGAGCAGCCGAGCTGCAGTGCTGGCGGCTGGTGCCCGGCCTTGCCCTGAGTTGCACCTGGATGTGTCCCCTACCCCAGCCCTGGCCTCTCTCTGAACCTCTTCCTGCATGGTCCCCCCTGCGCCCAGCTCATGGGCATGCCCCGGCCTCGCCCTCAGCCCCACCCCGTGTGGTGCCCCCTGCCCCCAG
Seq C2 exon
CTCGTGGGCATGCCCTACCTGCACGAGGTCCTGAAGCCTGTGATTAGCCGTGTCTTTGAGGAGAAGAAGTACATGGAGCTGGATCCCTGCAAGATGGACCTGGGCCGCACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111344-RASAL1:NM_004658:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(11.1=100)
A:
NA
C2:
PF0061614=RasGAP=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCCCAACACCCTCTTC
R:
CGGCCCAGGTCCATCTTG
Band lengths:
172-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)