GgaINT0006282 @ galGal4
Intron Retention
Gene
ENSGALG00000008150 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr15:11195740-11196025:-
Coord C1 exon
chr15:11195961-11196025
Coord A exon
chr15:11195853-11195960
Coord C2 exon
chr15:11195740-11195852
Length
108 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGACCTCCTGCCCCATGCAGGCA
3' ss Score
9.17
Exon sequences
Seq C1 exon
CGGACCCCAATACCCTTTTCCGCTCCAACTCTTTGGCCTCCAAGTCCGTGGAGCAGTTCTTGAAG
Seq A exon
GTGAGCCCGGGAGGGGACGTCACTGCAGCACCCTGCGATGGCCTCAGGGCATGGCGCAGCGCTGGGGACAGCATGGGGACAGCGGTGGTGACCTCCTGCCCCATGCAG
Seq C2 exon
GCAGTGGGGCTGCCCTACCTGCACGCGGTCCTGAAGCCGGTGGTGAACCGCATCTTCGAGGAGAAGAAGTACGTGGAGTTGGACCCCTGCAAGATGGAGCTGAGCCGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150:ENSGALT00000013239:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(11.1=100)
A:
NA
C2:
PF0061614=RasGAP=FE(19.5=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSGALT00000013239fB11311
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCCAATACCCTTTTCCG
R:
GGCTCAGCTCCATCTTGCAG
Band lengths:
170-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]