GgaINT0129974 @ galGal3
Intron Retention
Description
NA
Coordinates
chr19:4137117-4137471:-
Coord C1 exon
chr19:4137407-4137471
Coord A exon
chr19:4137230-4137406
Coord C2 exon
chr19:4137117-4137229
Length
177 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCG
5' ss Score
5.74
3' ss Seq
TGCTGTGGTCCCCTGGGCAGGTG
3' ss Score
9.21
Exon sequences
Seq C1 exon
GTGAACCCAACACTTTGTTCCGGAGCAACTCCCTGGCCTCAAAGTCAATGGAGTCTTTCCTCAAG
Seq A exon
GTGCCGCTGCCCCCAAATCCCCCTTCTCCACAGGGAGCTTCACCCCAAACCCTGCTCTTTCCAGCTCACCACAGCTCCACGCTGTCCTAAGGGGAGGGCACGGGGAGCTGTGCCTGCCTCTGGGGCCAAGAGTTGGAGAAAACCCCCTAAGGTTGGGTGCTGTGGTCCCCTGGGCAG
Seq C2 exon
GTGACAGGGATGCAGTACCTGCATGCGGTGCTGGGGCCCACCATCTCCCGGGTGTTTGAGGAGAAGAAGTATGTGGAGCTGGACCCCAGCAAGGTGGAGATCAAGGACGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876:ENSGALT00000002911:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(11.2=100)
A:
NA
C2:
PF0061614=RasGAP=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACCCAACACTTTGTTCCG
R:
CCAACGTCCTTGATCTCCACC
Band lengths:
178-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]