MmuINT0131993 @ mm9
Intron Retention
Gene
ENSMUSG00000004952 | Rasa4
Description
RAS p21 protein activator 4 [Source:MGI Symbol;Acc:MGI:1858600]
Coordinates
chr5:136577495-136577927:+
Coord C1 exon
chr5:136577495-136577559
Coord A exon
chr5:136577560-136577814
Coord C2 exon
chr5:136577815-136577927
Length
255 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGGTTTATGGTGGCTCTCAGGTG
3' ss Score
7.12
Exon sequences
Seq C1 exon
GTGAAGCCAACACCCTCTTCCGGAGCAATTCTCTGGCCTCAAAGTCCATGGAGTCTTTCCTGAAG
Seq A exon
GTGAGGTTGTATGGTCATCTCACAGACAAAGACTCACGGCCACAGAGGGTAGTTCTGCCTGTGTCTAGGGCCCTTGAAGGCCAGACACTTTCATCACCCGTCTATGAATTCATCTATACATGCATTTATCCATGCATGCATGTAGGCACACATTCAGTAGAGAAGTCACCTTAATTGTGCATCTGGCCCAAATCTGAGTCTCCAGGCAGATGGTATACACAGTGGTTAACTAGTGTGGTTTATGGTGGCTCTCAG
Seq C2 exon
GTGGCAGGGATGCGCTATCTGCATGGCATCCTGGGCCCCATCATTGACAGAGTGTTCGAGGAGAAGAAGTACGTGGAGCTGGACCCCAGCAAAGTGGAAGTTAAGGATGTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004952-Rasa4:NM_133914:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(11.1=100)
A:
NA
C2:
PF0061614=RasGAP=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGCCAACACCCTCTTCC
R:
TCCTTAACTTCCACTTTGCTGGG
Band lengths:
172-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: