MmuALTA0014889-4/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:120664446-120664858:+
Coord C1 exon
chr5:120664446-120664510
Coord A exon
chr5:120664694-120664745
Coord C2 exon
chr5:120664746-120664858
Length
52 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGCACACCCCCCTGCCCCAGCCC
3' ss Score
5.03
Exon sequences
Seq C1 exon
ATGACCCCAACACCCTCTTCCGTTCTAACTCCTTGGCATCCAAGTCGATGGAACAGTTCATGAAG
Seq A exon
CCCAGGGTGTTCCCTGCCACCCTTAGCCGCTCCGTGTGGCCCCTGCCCTCAG
Seq C2 exon
CTCGTGGGCATGCGCTACCTGCACGAGGTCCTGAGGCCAGTGATCAGCCGCGTCTTCGAGGAGAAGAAATATATGGAACTGGACCCTTGCAAGATGGACCTGAACCGCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602-30-27,30-26,30-25,30-24-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(11.1=100)
A:
NA
C2:
PF0061614=RasGAP=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTCTAACTCCTTGGCATCC
R:
GTCCATCTTGCAAGGGTCCAG
Band lengths:
145-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types