HsaALTA1016081-4/4 @ hg38
Alternative 3'ss
Gene
ENSG00000111344 | RASAL1
Description
RAS protein activator like 1 [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr12:113114800-113115264:-
Coord C1 exon
chr12:113115200-113115264
Coord A exon
chr12:113114847-113114973
Coord C2 exon
chr12:113114800-113114846
Length
127 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ATGGTCCCCCCTGCGCCCAGCTC
3' ss Score
5.69
Exon sequences
Seq C1 exon
TGGACCCCAACACCCTCTTCCGTTCTAACTCCCTGGCATCCAAGTCGATGGAACAGTTTATGAAG
Seq A exon
CTCATGGGCATGCCCCGGCCTCGCCCTCAGCCCCACCCCGTGTGGTGCCCCCTGCCCCCAGCTCGTGGGCATGCCCTACCTGCACGAGGTCCTGAAGCCTGTGATTAGCCGTGTCTTTGAGGAGAAG
Seq C2 exon
AAGTACATGGAGCTGGATCCCTGCAAGATGGACCTGGGCCGCACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111344-21-24,21-23,21-22,21-21-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(11.1=100)
A:
NA
C2:
PF0061614=RasGAP=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCCCAACACCCTCTTC
R:
CGGCCCAGGTCCATCTTG
Band lengths:
106-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains