RnoALTA0033111-4/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000001374 | Rasal1
Description
RAS protein activator like 1 [Source:RGD Symbol;Acc:1311820]
Coordinates
chr12:41431291-41431716:-
Coord C1 exon
chr12:41431652-41431716
Coord A exon
chr12:41431404-41431455
Coord C2 exon
chr12:41431291-41431403
Length
52 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
CTGCACACCCCCTGCCCCAGCCC
3' ss Score
2.46
Exon sequences
Seq C1 exon
ATGACCCCAACACCCTCTTCCGTTCTAACTCCTTGGCATCCAAGTCGATGGAACAGTTCATGAAA
Seq A exon
CCCAGGGTGTTCCCTGCCACCCTTAGCCGCTCCGTGTGGCCCCTGCCCCCAG
Seq C2 exon
CTCGTGGGCATGCGCTACCTGCATGAGGTCCTGAGGCCGGTGATCAGCCGCGTCTTCGAGGAGAAGAAATATATGGAGCTGGACCCTTCCAAGATGGACCTGAACCGCTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001374-19-23,19-22,19-21,19-20-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(11.1=100)
A:
NA
C2:
PF0061614=RasGAP=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGTCGATGGAACAGTTCA
R:
GAGCGGTTCAGGTCCATCTTG
Band lengths:
137-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]