BtaALTA0024747-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000017830 | RBMS2
Description
Bos taurus RNA binding motif, single stranded interacting protein 2 (RBMS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034365]
Coordinates
chr5:57167137-57167656:-
Coord C1 exon
chr5:57167571-57167656
Coord A exon
chr5:57167326-57167462
Coord C2 exon
chr5:57167137-57167325
Length
137 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
CTGGCTTATGCCTCTTTTAGGGT
3' ss Score
9.71
Exon sequences
Seq C1 exon
GAGAGTGGCAGCCAGCAAAGTCAAGTGCCGGTGGATGCACCCTCAGAGCATGGCGTCTACTCTTTCCAATTCAACAAGTAACAGTG
Seq A exon
GGTTTCCCTCCCCGTCTTTGTTGAATATAAAAGAATTCTTGGATATGCTGATGCTCCAGACTCCAGAGGGCTGACCAGGAGTACAGCCCTTCTGTGGGCCCAGCTGAGGACTAACACTTGGTCATCGGTTTTCACAG
Seq C2 exon
GCCTGGGCCTGGAAAGAGAAATCTGCACCCCCGCCTTCTGCTCTTCCTCCACTCCTGGTGGAGCCTGGGCGGGTGTTGGCTGTCACCGTTTGTGTGTGCTGCAGTCAAGGACATCAACAAAACTTCTTTTCTTTTGTGAAGAAAGTTTGCTGTTTTGCTTTTAACTGCAATATACTCTTATCCTACTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017830-29-26,29-25,29-24-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAAGTCAAGTGCCGGTG
R:
TGCAGTTAAAAGCAAAACAGCA
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development