BtaINT0123466 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017830 | RBMS2
Description
Bos taurus RNA binding motif, single stranded interacting protein 2 (RBMS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034365]
Coordinates
chr5:57167137-57167656:-
Coord C1 exon
chr5:57167571-57167656
Coord A exon
chr5:57167463-57167570
Coord C2 exon
chr5:57167137-57167462
Length
108 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
CTGGCTTATGCCTCTTTTAGGGT
3' ss Score
9.71
Exon sequences
Seq C1 exon
GAGAGTGGCAGCCAGCAAAGTCAAGTGCCGGTGGATGCACCCTCAGAGCATGGCGTCTACTCTTTCCAATTCAACAAGTAACAGTG
Seq A exon
GTAAGAAACACACACCGAGGGCGGGGTGGGCTGAACAGCCTGAAATCAGACTGGTTCTCATGCTTGTCGCTCCGCCTCCCCACTCTCTCTGGCTTATGCCTCTTTTAG
Seq C2 exon
GGTTTCCCTCCCCGTCTTTGTTGAATATAAAAGAATTCTTGGATATGCTGATGCTCCAGACTCCAGAGGGCTGACCAGGAGTACAGCCCTTCTGTGGGCCCAGCTGAGGACTAACACTTGGTCATCGGTTTTCACAGGCCTGGGCCTGGAAAGAGAAATCTGCACCCCCGCCTTCTGCTCTTCCTCCACTCCTGGTGGAGCCTGGGCGGGTGTTGGCTGTCACCGTTTGTGTGTGCTGCAGTCAAGGACATCAACAAAACTTCTTTTCTTTTGTGAAGAAAGTTTGCTGTTTTGCTTTTAACTGCAATATACTCTTATCCTACTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017830:ENSBTAT00000023705:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCACCCTCAGAGCATGG
R:
CAGGAGTGGAGGAAGAGCAGA
Band lengths:
247-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]