MmuINT0132944 @ mm10
Intron Retention
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:128131558-128133725:-
Coord C1 exon
chr10:128133641-128133725
Coord A exon
chr10:128133368-128133640
Coord C2 exon
chr10:128131558-128133367
Length
273 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TGGCTGTCATTCCCTCACAGGTC
3' ss Score
10.07
Exon sequences
Seq C1 exon
GAGAGCAATGGCCAGCAGAATCAACTGGCAGTGGAGCCCCCCTCAGACCACGGGGTCTATCCTTTCCAGTTCAGCAAATAATGAG
Seq A exon
GTAAGAACTTTATGGTGGGGAATGCTGCTATGCTATGCTGAACTGGAAGATGGTGCTTGCAGCTTTGTTCTGCCAATAGCCAGACAGGTTAATTAATAGTCGTGTCCTCTTCGTATCGTCTCCAGCTAATGCCTCCTTTAGGATTCTTTCCCCCCATCTTTGTTAAACAGAAAGGAACTCTTGGAGATGCTCACAGACTCCAGAAGGTTTAGCAAGTTACAAGCCTAGCTGTAGCCTGCTGAGCACTAACACCTGGCTGTCATTCCCTCACAG
Seq C2 exon
GTCCAGACCTGGGGAGAGAAGCCTATGCAGTCCTCCTTGGGCTCCTTCCTGTGGCTGATGGAACCTGAGGAATCACGTTGGTTTTTTTTTTTGAATGTGCTACATTCAAGATCAAAAAGACTTTTTTTTCTTTTGCAAAAGAAGTTTCTTGCTTTGTATTTAATTGCAGCGAACCTTTCTCCTACCCCAAAGACACCAGTTGAGGTGCTTCTCATCTTCGAGAGGTTTGGGTATGTTGGGCTTTTAAAATGGTTTAAGAACAATCGCAGTGCTGTGAAGTCAGTGAAGGGGCGCTGCTTGCCAGGTTCAGTTAGGGACTATTTTCAATGTGTGTTTTAGATATGCAGGCTTAAAACTTTTGTTTTGCAAAGCTCTCAACACACACTTTGCACACACCCACCCACCTCCCTCCCACGCACTGTTTAAGGCAGGGTCTCACAGTGCAGTCCTGGCTGGCTGACAATGTAGACCAGGCTGGCTTTGAACTCAGCGATCCTTCCCACTCTGTCTGAGTGCACCGCCATGCCTAGCTAGTTGTTTTTTTTTTTTTGGTTTTTTTTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGCGCTCACTTTGTAGACCAAGCTAGCCTCGAACTTAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACCGCCCGGCTAGTTGTTTTTTAAAACTTCTCCACAATGGTCTTTTTTTCTTTTCCATTTAGCTTAGCCTGCCTACTTTGCCTTTTTACAATTTTTAATTTTATGAATTTGATTTAAATTTCATGTGGAATTGGGGGAAGGGAGAGCAACGCACAGGTAGAGAAGTGTGGCAGTAGAGGTTGCTTTCCCTCTGCCCTCCTGGCCTAGGAGGGGTTAGACTTTGACTTCAGGAAGCAGACATGTGACAACCATGCAGCCTTTGGAAACCACCTTCAACCAACTCTGGTGGCAAGTGCCACTGAGAAGTGGCATCCAGCTTCAGCATCCTGGATACCTGCTCTGCCTCCTGGAGGGTCTTGGGTCTTCATCCTGCCCCAGGTCTCACAGCCCCTGCCCCTGCTGAGCAAGTTCTGCCTTCCACTTTACCAGGAGGTTGTTTTGTCCCCGAGAGGCTGCTGTCTTGTCCATCATCATCCTTGATTACCAAGCCTGGGGAGTATCATGTGTGCTGGTCCTGAACACCTGACAGAACCTGGCCCCACTCCTCCACCCCTTATTCCCTGGCAGTTATTTGGTGTAGACTAAACCCCAGTCCAGCCTTGGACATGGAGCCTGTTAGTTCATGTACTTGGCCAGCAGTGACATCTGTGACTTTGCCTCCTGGAGGATCTTTTCTGCCTGGGTTCTCACAGCCTCTCATCCCAGCTGCACATGGCTGTACTCAAGTGGTACTTGGCTGAATCACTTAATTCAGCAGGAGCCATCTTATTTAGCAGGGCTCACCCTTGGTTGTATGTACATGCCAAGTGCACACAGTTTGAAGGGATGAAAGCAAGAACTGTTGTGTATACTGTGCATGCTTGAGAATGGACTGAGCTTTCTCTATGCAGCATACCCAGCCCAGCCCTGGTGTTTGGACCCCTTCCCCAGGGAACCAGACCACCAGAAATAATTTTCCTTCTTGTGGAAGGACGACGGGGTGCTAGGATAGAAAAAGGCAAGACTCACAGCTCCCTGGCCACTCAAAGGTCAGGAGGGACTTGTAAACATGCCTGCCGTTAACTATTCCCTTCTGCAAGACTTTCAGCACAAAATGTGACTTGTTACATCACATCCCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043:ENSMUST00000099139:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCAGCAGAATCAACTGG
R:
CCTCTCGAAGATGAGAAGCACC
Band lengths:
303-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types