HsaINT1029003 @ hg38
Intron Retention
Gene
ENSG00000076067 | RBMS2
Description
RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909]
Coordinates
chr12:56588932-56596196:+
Coord C1 exon
chr12:56588932-56589018
Coord A exon
chr12:56589019-56589139
Coord C2 exon
chr12:56589140-56596196
Length
121 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CTGGCTTGTGCCTTCTTTAGGAT
3' ss Score
10.31
Exon sequences
Seq C1 exon
GAGAGCAGCGGCCAACAGAACCAAGTGGCAGTGGACGCACCCTCAGAGCATGGGGTCTATTCTTTCCAGTTCAACAAGTAACAGTGG
Seq A exon
GTAAGAACCACATGCTGGGGGGCAGGGAGGGCTGCACTGGCAGACAGCAGCTCAGCCCGGCCTGAAGTCAGACAGGTTCTCATGTTTGTCTTGTCTCCTCTCTGGCTTGTGCCTTCTTTAG
Seq C2 exon
GATTCCCCTCCCCATCTTTACTGAATAGAAATGAATTCTTGGAGATACTCATGCTCCCAGATTCCAGAGGGTTAACCAGGAATGGAGACCATCCGTCGGCCCTGCTAAGGACTAACACTTAGCCATCGTTTTTCACAGGCCTGGGCCTGGAAAAAGAAATCTCTACGTTCCTGCCCTTTACTATTGCTGATGGAGCCTGGGGGAACCATCACTTTTTTTGTGTGCTACATTCAAGGAGATCAAAAAAACTTTTCTTCTTTTGCAAAGAAAGCTTTTTGTTTTTAACTGCAACGTACTTTTCCCCTACCTTGAAGAGACATGGTGGTCGCAGCTTCTCATCTATATGAAAAAGTTTTCGATGTATTGGAATTATTTGGGAATGCTTTTAAAACAATTTGTAATTATTTCTTTACAAACCAAAACAGAACAGAAAGGTGTGGTGCTGGAACATCGATGAAGGAGCCCTACTTACTGAGCTTAGTTATGGACTTTTTTGATGCATGTGTGTATGTGTTTTAAAAAGTATGCAGGCTCTAAAAATGTTATTTTGTAAAGCTCTCAGCTCATGCACCCCATCTCCTCTTCACCCATATTATGCCTTCTTTCTCTTGTCCAGATTCTTCTTTTTCTCTTTTCTAAACAGCTGAGCCTGCCTACTTTGCCCTTTTACAGCTTTTAATTTTATGGATTTTTAAAAATGAAATTTCATGTGGAATTTGGGGTTGGGGGGCAGGCTGGGCAAGGAACAAGGCAGAACACTAAGTAGGCCATGGAAGTGGCTGTTCTTTCCCCCACCCTGCCACACCCTGGGAGAAAAAACTAGACTTTGGCTTCAGAAAGCACAGATGTGACCCAGGCTTACTAAAGAGACAACTCCACAGCCCTGGGAACACACCCTTGAGCCAAACTTGGTTGAAGACTAGGTCTTCCCTGGCAAGTTCCGGAAGAATGGACTTACTGACTTTTATCAACTCTTCTCACTGCCAAGGCCAACAGCATCTGAGGTATAGCTTTTTGGGAGTACCTGCTTTCTTGCCTCCTGGAGGATATTTTCTGTCCTGGGCTTCATGGCCCCTCTCTTCCCTGTTACACATTGCTGTGCTCAGAGCCTTTGCAGCTGCGACCTAGTTGAATCCACATAGGCTCCTTCCACACGGTGGAAGATCTGCTGCTTCACTCACAGACCAGGAGTTCTCAATCAGAGGTGGTTTTGTCCCTCAGGCCTTTGGCAACATCTAGAGACAGTTTTGATTGCCACGCCTGGAGGTGGGATGTGTGTGCTACTGGCATCTAGTGGCTGCTAAACATCCTACACTGCATAGGATAGTCCCCACTACCCCCAGCCAAGAATTATCTGACTCCAGGGGTCAATATTGCCAAGACTGGGAAACACTGATATAGACAGTGTTGTCCCTGCCTCCTGGGTTAGGGTAAATTTTCACCCCAACCCTGGACAAACAGTGCCTTTTGACACTCATGCAACTGTTGGGGAAGGACTGGACTGGGATCCTTGAATTCTCCCCAGACTTTGACTTTTGATAACTCTGCATATAGCAAGAGTGATTCTTGAAAGAGCTGTGGCTCCATGCTGAATGCACACATGTACTCAGAGGGATTCAGGTGGGCATTGTTCTGGTGTGTGCTGTGCAATGGTGGGAAAGGACAAAGCTCTCTAAACTGTCCAGAGCAACCTGCCCTGCCCCGGTGTGCTTGGACCCTTTGCCCAGGGAACCAGGACATCAGAAATAATGTTCCTTCTGTGGAAGGACAACGGGGAGCTAGGGTAGCAAAGAGCAATAAATTCCAACTCTTTATGAGGTCAGGAGTCCTTTAAAAAAGCCTATGTCTTGGTCTTTAACTGTCCCCTTCTGCAAGATGTGACTCTATACACATGGAGACAGATTGAAGAAAGACTTCACCCATCTTCTAGGAAATAAAATCCTGCTCTTGTCTTCTCCCAGTCACTCCCTTATGCACTGAAAGGAGAATTTGACTCCCTTGCACTTCAAGGCCAGGTGCCTCTCCACTAGACAGTCAGACAAAGGCAAATAATGGAGGATAGAGAGACAGGTGTTCATTAGGCTGGCCATAGGGAGAGGAAGGGGGTGACAGCAGGGGAAAAGAAACTGTAGTATCAGTTGTCACAAGTAGAGCTCGGCCCAGCTTTCCCTCCCTTCCCAGCCACCCTAGAATTGAGAGTCCCAGTGCCCCTAGTGTCGACTTTCTATGTACATCCTAGGGGTGAGGGAGTGCGGGGCAATGGGTAGGATATAAAGCGTAAAGGACAAATTGCCGCAGTCTTCTAATTGATGCTTCCAAACTCAGGAAGGGCTTATCCAGTGTAAAATAGCCCCAAGCCCAGCAACCTTCTAGAGGGCTCTGGCTGGGCAGATAGCTTTTGTTTTTGAGTCTCCAGCCCTCAGTCAAGGAAAATATACCATAGCTGCTTTCTTGTCAGTGGCCTTTGAGAGAAAGAGAAAACAAATCTAGAATTCTGTTCATCTGATAGACCGGGGGAGCTTTGCTATGGTAGGAGGTTTAGGAAGGGCCTTTCACGCATAGAAACCATTGTTGATATTGCCACTCCCCTCTCCTCTGCCTCACAGAACTCCTGATTCTGTCTTCTTTCTCTCTCTATATATATATTTTAAAATGTTTAAATGGCTCTAATTTTTTGTTTTGAATTTTGAATTTACCTTTTGGAGTTCTTCTCATGTGAATCTACTTGTTAGATTGTATTAATGAGTGTTTCTGGTTTGGGCATGGGAAGTGATGGGGGCCTGAAGTTATTTTGCAGTGGCTAATGGCACTGAGGAATTTCTTTTTTGGTGCATTTGGTTTACACTCATTTCCTCTCCTAATTGTTAGTTCATTTGTAACAGTGGGTGAGTGTTTGGAGGAAAGGAGGGAGAAGAAAGGAGGGATACTGTTTCTCCCATGAAATAGTCTAATTGGTTGGGTTGATGGCAGAAGGAAACATAGGGGAGCCTTCCAGCTCACAGCCAAGGGTTGGGCTCTTAAACACTATGCCTAGTGTTTTCTGAATGCTGTCTTCATGGAGCCCAGCTCTTACTCTCTTTGTACTTTACATCTCACCCCCACTCATTACAGATGCTCATAACATTCTTAAAATATTTTAGTACTTGGCATTTTTCTGTTTTCAGTCAGCTAGAACACACTAGAGTCCTTTCCTCAGATGGCATAATCCTTTATAGGCTCTGAGCCTGCCTAGCCATCTCCTATCGGTGTTATTACTCCTCATCTCAGGCTCTGAGATGATACTCAGACCCTAAACTGATTGGACTTTTTGGAGGAGGGTGCCAGTAGAGAGGTCAGGAAGATGTGGAGATGATGATGGAGAGAGATGTTTTTATTTTATTTTATTTTTTCAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAATGGCACGATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCATGTAGCTGGGATTACAGGCACCCACCACCATGCCCGGCTAATTTTTTTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCTGCCCGCCTTAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTTTATTTTATTTTTTAGAGATGGTCTTGCTGTGTCACCCAGGCTGGAGTGCAGTGATGCAGTCGTAGTCTACTACAGTCTTGAATTCCTGGGCCCAAGGGTTCTTCCCACCTAAGCCTCCCAAGTAGCTGGAAGTACAGGCACATACTACCAAGCCCAGTTCGTTATTTTAAGTTTTTGTAGAGACAGGGGTCTTACTATGTTGCCCAGACTGGTCTTGAACTCCTGTCAAGTGAGCCTCCCACCTCAGCCTCCCAAAGTGCTATGATTACAGGTGTGAGCCTCCATGCTTGGATGAGATGTTGTTTTTAATGTTTTTGGTTTTTTGGTTTTGTTGTTTTGTTTTTTTGAGACAGGGTCTCACTCTGTGGCCCAGGCTGGAGTGCAGTGGCACCATAATGGCTCACTGCAGCCTCGACCTCCCAAGGCTCAGGTGATCCTCTTGCCTCAGCCACCCCTTCCCCGGCCACCAAGTAGCTGGGACTATGGGCTTGTGCCACCATGCCTGGCTAATTTTTTTATTTTTAGTAGAGATGGGGTTTTACCACGTTGGCCAGGCTAGTGTCCAACTCCTGACCTCCAAACAGCTAATTTTTGTATTTTTAATAGAGACAGGTTTTCGCCATGTTGCCCAGCCTCGTCTCGAACTCCTGGGCTCAAATGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACCACACCTGGCCTTTTCAGTTTTTTTATTTTTATTTTTTCTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGAAACCTCCATCTCCTGGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCTGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTTGCCACATTGCCCAGGCTGGTGTTGAACTCCTGGGCTCAAATGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACCCGGCCCTTTGTAGTGTTTTTAACTAAAGAATTTGTAGAGTTGCCCAGGCCAGGAAGCCTGGTGGCTCTAAAGGGTAATAGACCTTGTCAGTAACAGATAAGGAGTGGTAAGAGGACATTACTCATATTGAAGATGAAGACCAGACTTTGCTGCTTCACAGGCCATGCGCTGGGTTGGGCCACTTCAGCTCCACTCCATTCGTTTTCCTTTCCTAACTTGACAATCAGCTCACTCACCCTCCCTTAGTGCCTCCAGTGCCTACTCCTGTCACTCCAATGTCAACCCATTGGGAGTTGAGGCCTGTCACTCCAATGTCAACCCGTGGGCTGTTACTTTGCGTCATATGATGCTGTGAGAGGCCTTGCTGGAATGTCCTAGGAATCCCTAGTAGCAGTGGCTATTAGTCTTCTAGAAAAGAACTATTGCTGCTGCCTTGTGCACATGCCCCACCTTCTGGGCAAGTGGCAGCATTGCGCTCATGAGGGGCTTTGCATTCTTAGCCAAGGGCAATAAACTGGGTGGGTGATCTGGCCCAAACTTGCCCCTAGGCTCTGCTAGCCCTGAATCAGCAGGCTTCAGAGACGAGGGTGGGTGTTATAAAAGCCAGTCTGTAAAGGGTAAATTCCAAATCTTGTGCCTTGTTATACCAATCCTTCCTGATTCCCGTTTAAACCAACTACTCTATTTCTGTGCTGCCTACATTTTCAATCCTCCCACGCATTAGCAAATTCCTGAAATTTCCTCATTTGGTAGGCCTTCCATAGGAGTCAGCTATGGACTTCCATAGGAGTTGGCAGCTAAAACCAGACTGTGAGCTTCTGTCTCCGTTCTGATTTTTGCTGCACCTCCCAGGGGACAGTCCCCACATGATTACAAAAGCCAGGTGCCCTCATCACCCGTTACCCCTGACCTGTCCACTTGTTTTGAATAAACCTTCATTCTCCAAGCAGATCCCCAAACTTCCTTGTCCTTGTTACACGTCTACCTCACAACCTCACAATTCAACAACAGGTAAATACCTGGATTCACTGATTTCTTTACTGTCCTTCTCTGAGGGTTGGGAAGGTGGGGGCTAGAAAAGGCTCATAATTTTTAAACTCTTGGGAATTAAACTTGGGAATTTCTATTCCTACAGTGTTTTCTCTGGGATTTTTAGCTCACTGATCGCCCTAGAATAGTGTGAACTCTCCAGATAGGTCCTGCTGTGATAGGCCAGGGGAGTAGGCTGTGCAGTGACGGCTTAGGGTAATAAGTAATGGTTGGAGGACACCAGCATAGGAGCAGAGTTTAGAACTTAAGAGGACAAGAAAGCTGCTCAGTGGCTGGCGTATAGCTGTGAAGGTAACCAAACACCAAAGAGGGAGTCTGTCATTTTTATAAGGCTGGAAGCGAATGTTCCTTTTCTACCTTAACATACAGTTTAGGGGGTTGCACCAAGACAAAGTTTCCAGGCTGGAGGGTAATACATATCCAGCGCGAGTGAAGTCCCCACTCCAACATATACCCTTTTTGGGTGGGTAAACACCTCTTTGCATGTGGACAGAAAATGTTTATACTTAAACAGACATATTTTGCATATTTTTATCTGGAGACTTCTTCTAGTTTTATACTCTTCCCACATCTATGCCAATGCCACCATTCTAAAACTTACACTCCTTTTCTACCCCTGGTCTTTTCCTTGTCCTTCCCTACAACTTGGTAGAGGTCCATTTTGTCTTACTTCACACTTTTTTTTTTTTAAATAAAACACAAAAGTCTACGTCTTGGTGTCTTATCCGTGAGTGGGAAGTGGTAAGCTGGTGATGGTCCCATATTTGCTATGACAGGAACACAGAGGTGGCAGCTTAGGAAGCTGGGGCCACATCTCACAAGGCAGGACCTGGATGCACTGAATCCCCCTTTGCTCCAGCAACTCAGCCAGACATTTAGGCAGGAGCACTAATGACCCTTTCCATCCACACAGAGGGTATGGAACAGGAGCCCCTGTTGTTCCCTTGCCTGTGGTCTCTTAAGCCAGTCATACCTATCCCAACGCCGTCTCCCCCTCAGGTGTGTAGAAGGGAAGATGAATACACAGAGTCTTTTGAATCTCTATCAAATGTGGTTTTTTTTATTCAACAACTGACAAGCACTTTTCTACAGCTGCACTTGTGGAACATCACATGGCAAAAACAGGAGTTTTTTCGCTAGACTTTTTTTTTCTTTTTAACCTTATTAAAAATGAGATTGGTCCTAAAAATATAGAAAGAAATAAATTTAAATTCACAAAAAACTGTACATTATCAAAAAGTCACTAAAACACCACATTTGGTTATATAAAAAGTCCCTTTTGCTGTAAAAGGAACACAGAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076067:ENST00000262031:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGAACCAAGTGGCAGTGG
R:
AGGGCAGGAACGTAGAGATTTCT
Band lengths:
251-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains