DreINT0125505 @ danRer10
Intron Retention
Gene
ENSDARG00000056150 | rbms2b
Description
RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51]
Coordinates
chr23:25836113-25842224:+
Coord C1 exon
chr23:25836113-25836200
Coord A exon
chr23:25836201-25841175
Coord C2 exon
chr23:25841176-25842224
Length
4975 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TTTCATTTTTCTTATTTTAGTAC
3' ss Score
8.29
Exon sequences
Seq C1 exon
GAAAACAGCGTGCAGCAGCAGCAGGTTGGCATAGAGACGCCCACAGACCACACAACATACTCCTACCAGCATGGCAAATGAAGAGGAG
Seq A exon
GTGAGCTGCTGCACTTCCTGTGGCTTTCGAAATGGTGTGATCTGTAATGGAATGAGAGAGTGAAAACAATGTTTATCCATTAGATAATTAATTAAAGCAATGCACTTACATACAGAGTAGTACATGGTCCAAAATATCATTTTTCAACATCTATTTCTCTTTCAGCTTCATTAATCATGGTTGCCAGCTTAGCGACTGTCACTATATTTAACGACAAATTTTCAAAAAAAGTGTCTAGCAACAAATCTAGCTACTTTTTTTGGGGTGTTACTGGAGATTTCTGTAGACACTTGTGTGTCCGTACTTTACCGTTTCTACTCTTCTTCACGAGCTGCGGGTAATGGCGTTGGTCCCTCCCCCACCCCAGAGCACTGACAGGTGGTCCAGTCCTCGTACAGCAGTCTCTCCCACTAACAGACTGATTTCACGCGGCCGCCATTTTATAGAGTGAAACCGAGGCTGCGGTGGGAAGAAACCCGGAATTATTGCCTCACTCACACAGTAATGTTGTGTACCTGGCTGTTTATCTTATTAGAGAAGAGAAAGTGACACAAATTTATACTTTCACTGCCTTCCGAGTGAGCCGAAGGTCTGTTCTGAGTTGAGGGAAATGGCTCTAGCTAGCAAATATTTTCTTTTACCAGACACACGTTTTAGATGCCATTTATCAAACTCAAGTTAATGAACCGATTCTTTCACTATATTAGACTTGTCACAATACAAAATTTCGGTACTGAAATGTAAAAAAAAAACGTCCATTTACCGTTAACATTTAAGCACTGTTAATGGCGTTCTTAAACACTGCTGATTTGCCATTGTGTTCACATGCTCAACATAAATGATTGTGATTGGTCGTGTAGGTCATCAGTTCACCGCACTTCACCGATGTTTAACATTACCGATCGCAACCACAGACGAGCGATCTGCTGAGGATTCGACTGATCTTCACGGCTTTAAAGTGCTCCATTGTCTATCTGTGTTTGCAATCTGTAAAGAACGCGCTCAGCGGATATTAAATGATAGCAGGAAATGGGCATTTTTAAAACTTCAGTACTGGGACAACACTATTACAGACAACAGGAAGATGTGCTACAGAGGACTGCAGTGTTATATCACTCACCGGGTTACATTGGCTGAAGCAGGGAAGCGACTCCACTGTGTTTACTTAGTGCCATGAACTGAAGCCTTAAGCATATTACTCTTAAAGAGACTGTGATGTTGTTTGATGCCTTGATGCTTTTAATTGTTTAAATTGAACTGAATGATATTACAGTGATGTTTACACCATTTCTGCATTTTGAAATAGCAACAGCAGCTGGAGGTTTGTAGTGCACAGCATGTTGTTGCAATATTCACAGTGCGAATCCTACACTTCAGTTTCTTCCCACCACAGCCTCGCTTTCGTGTTTTAAAATGGTGGCCGCATGAAATAAACGTATTGAGAGCAGATCACTCCTCTGCATACCGACCTCAAATGATTTAGTACCGCAAGTGTGAGGTATTTCCCTTGTACAGTTAAACTGATCTGTTTTTCCTTTGTATTATATTAAACAGTTTAACTTGACCGTTTATTCTTTTCTTGTTCACAATGAAGTATATTTTACAGACGGAACCGAGAGATTACTGCAAATTCACTACACATCTATACTAATATACTGTATTCAAACAGCTATAAATTTAGTTAAGTTCACATGCAAACATAAAGCGTAGTGCAAATATAAATACCCCTTTTATAACCATAGGCTGTTAAACATTCAGAAACCGTTGGACATGATGATATCAGCAATATGCAAATTGATGTATGACGTAATCTAGCTTTACTTTACTTAAATGTAAAGAAACTTTGTGAGATAGTAACGAACTTAATTTCACAAGTTTTCATGAAAATTCGCCTAAGAAACCATATTATGAATCAAATATTGGTAATATTTGATCTATTCAGGGTTTTAATAAATGTCAATAAAACCATTGTTTTTCATTCTGCTATATGGGCATCTGACTAGGGCTGCACAATATCATTTCAGCATTGATATAGCAATATGCACATCAACAAGACACATCGCAAGATATGCAATGTAGAGTCTAAATTAATTTGTTGTTCAATAGTTGACTAGGAGCTACAGTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAGGGATGTAACGGTATTGTAAATACCGTCATACCGCAATATTAATTTTTTTCGATATTACCGAAGTCGCATGACTCGGTAAAACTATAGGTCTTCTGAGAAAATTTGCTCAGGCGAATGAAGCGAACGGGAGGTAACGAAAACTACAATTGCCATCAGCCCATGCTTGACCATCATCCCTTGCGGTCTGTTGTTGCTACAGATCCAGTAATGCGGAAATGGAGTGTGCTGCTAGAAGCGGGAATGAAAAGAGCTGGAAAACTCTAAAGCAGGTCGCACACCAGAAGCGCCGCTCGGCGCCGCGACACGGCGCGTACATGACAGATTAAAGTATCGCACACCAGACGCGCACATTCGAATGATATTTAACATGAAACTAATCAGATGGCACTCTGTGGCGCGGCTGAAAAATGAACTGCGTCCTGAGCCGTCGCCGGGCGCCGCCGACTTGCGGCGCCGGTGTGTGTATCCTGATAGAAACCTATGTTTAGAATTCTAAAATACGTGGCGCTGCGCGGCGCGCCGCCGAGCGTCGCTTCTGGTGTGCGACCTGCTTTACACGCACAGTTCAGTCCTGCATTCTCTCCGTGTAAGTTCAGACTTCGCAAGTTTGATCAAGGCTGCAGTCTCTTCTTCTCAGTTTGATATGGAAAAGCAGATTATACCGAGGACACGGGTAAATCTTCAAAGGGAACAGTGTACTTTATAACTTCATTCACATCACCCTGGCTTCGTTGTTTCACTTTCTCAACAATAAAATGTAAACATGATTTAAGGAACTGCCTATTTTCATTTTAATATTAGCAACTTAGACAGCAGAAATGTTGAGGCGCCGTGCTGCATGAGCGTCATCTTCACTGTGGATATTTATAACAAAACGGAGCCGATAACAACTGCCTCCTTTCAATTTCAGTGAAAATACGAAACACACCCTCTCTTTTGCTGAGTATCAGTTTTAAGAATCGATAATGGCCATTTTAAAAGTATAACATACAATAAGTTTTTACATTATAGGAAATAAAGGCAAGCGATCAGTCAATATACAGAATGTACGTGGTTACATTAATCATTAACTTATCTTTGCGCTCAGCCAAAACACGTTACCTGAGAACAAGTAATAGATTCCAATGCCCAAAGTCAGGGAATATGTCGTTAGATAAAGACAACAAGATAAATGAAATATCCCGTTTAATAAATATAGTGAGATTAGATCCAGCGGGAGATGCTTGATGAGAAGTCCGACTAGCAGAGCTCTCATCTGGGTAGATGGGCTGAGTGTGATTAAATGTTGAATGTGATGAGTTTTCAACAATACTAAATTGAAACTTTATTTTTTTTACATGGTTTAATAATTTTTTGTTATTAAAATTGAAGTTCCTGTTTCAAAGCTTACAGATAGATGGCTAATTTGTATGTCATTGACACTTTTGGCACTTTTTTGGAGTATTTTCATAAGTTTTGTTTTTTCCTGTAAATGATTCAATAAATACCGTACCGTGACATTCATACCGAGGTATTACCGTACCGTGAAATTCTGATACCGTTACATCCCTAATATATATATATATATATATATATATATATATATATATATATATAAAATTTGTGTATTGTTTCTAGCACAAAAATCAACATTTCAAAGTGAAAACAAGATTATTTTACTAACCCCATTGGCAGATAATTTAGCTTGCTTTGAGGAAAAACTCTTAATTATGACTTATTTCTTCTGAAAATGAAAACAACAATATTTGAACTTGTTCTAAGAATTTTTTTGATATTTGGACTTTTTTCATTGTGATTATTCAAATTCTGTAGCTGAATAATATTAGACTCATTAAAAAACGTCAAATAGTGCAATTCAATCTATCTTGTGAAACTGTATTCATATCGCAATATTTATTGCAGAAAAATGAAATACTGCAATATCACATTTTTCCAATATCGTGCAGCCCTACTTCTGTATACATGCAGCAAGATCTTTACATAGCCATGTACATTATGATAACTGTTAACAAAAAATATTTCAAAATATGGTTGGCATTGAGCTTTTTTTTTCGGATGGTAAAAATGGTTTACATAGATCCTGGATTGTTTAAAAACCGTAACTTCTTTGTGACTAAACAAAGGAAGTCTTTAAGGCATGAGGGTAAGTAAATATTAAGTTAATTATAATCTTGGCATACAGTGCTCAGCATATATATCACAAATCTCTCATTTAAATGATTATTTTCAATAGTATGCTTTACAATTTTTTTATTAGTGGATATACATTTGATTAGTCAGTACTGAAGCTAAATCTGAACCCAAAACTAACAAAATAACTTACAATGGTTCAAAAATTAGTAGCCCAAATTTTTTATGTTTGGGAAAAAATGTAAAATAAAATTTTCAAAAATAGAAAAAAAAATCAAGAGAAACAGAAAATATATACAATTTTGTTGAAATGTTGTAGTTTGTATTTTTTCTTTTGCAATATTTTGCATGAATTTAAATCTATTATCTTTCCATTTCTGAAGATGTACGGTGACTAAAATATTATTTTAATAAATATATGTTTAATAAATCTGTTTTGTTTAAATGCACCAATATATATTACCCATATTCACTGAGAAATTTATAAAATATTCATTTTCAAAATGGGGTGTACTCATATATGCTGAGCACTGTATCTACTAAACCTAAACTAAATTACTAGTCATTATTCCTCTTTACAAAAGCTTCAATTCTGATTGAATGATCTTTCATTTTTCTTATTTTAG
Seq C2 exon
TACATTCATAGGAATGATGGAGGACTTGGATTTTGAACCCGAAATAAAAAGAAACGAACATTGGAAAAGGAACTGAGAAGCACGTCTCTTTCCAATTTGAAGAAAGCAGACTTTTTTTTTTCTTGGAGAAGACCAACCGATAATGAAGCTAAAGCTATTTTAGTGAGCGAAAGACTTGGATGGAGAAAGCTATGACTACAAGGAGGTTCACAAAAAGCAAAGTAAGCTTTTTTAAACACAAAGACTCACATACATGCACACACACACACACACACACACACACACTCCAACACACCTTGAGAAATATTTTTCAGCAACTTTATTTTCTAAAACATTCTGCAAAGCCAGAATGAATCAACTACGATGTTACAGCACCATGTGTCATTTTAATTTGAATTATTGTTTTTTGTAAAATTCTTTCAAGATTTTGTTGACTGCTTTTGAACTGTCTGCTGCAAACGGAGGAATTTTGTACATAAAACTGTTTTTTGCAAAGATATTGCTGCATTTTTCTTGAATATCAATTTAAGGAAATCCGGATGAACCCGCTTAAACCAGCAGTTAAGTCGTTTTGATAGATCTACAGAAAAATGTACTGTAATGAAGAGTGTTGTAAATGCCCTCATTGTTTCGAGCAAGCTTGTGTCCAGCAAGATGAGACTGAATTCTGAAACCAAGACCTCATATTCCTTCACAACTACAAAAAAATGTCATTTTCTTCCAAAATGCTGCTTTTTCTTGTAAGTTAGGTTATGCTCTGTTTAAATGTTTGAGATTTATTTTTGTATTTGAAGATCATTTTTTTAAAAGTAAATTTCAAAGAGAAGCTGTTTGGATGATAAACTTTTTATGGCTTTGTTTTCATGTCAATGGTTCTGTCCTGCTCCTTCATACACATTGGTTGTCTTTTCTGTTATGCACTGTAAGGAGTTATCCACCAATGTTGTAATGTAGGCCTGTAAATGACTTTTTCTTGCCTTGGTGAACTTTAATAGCGAGGAGCGTGTTCTTTGGGCTGTGTCCCCTGGGATATAAAAATGGCAATATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056150:ENSDART00000060059:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]