BtaALTA0026058-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000021337 | SBF1
Description
SET binding factor 1 [Source:HGNC Symbol;Acc:HGNC:10542]
Coordinates
chr5:119982315-119982626:-
Coord C1 exon
chr5:119982513-119982626
Coord A exon
chr5:119982426-119982439
Coord C2 exon
chr5:119982315-119982425
Length
14 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TCTCTGTGTACACCAGGCAGCTT
3' ss Score
-0.96
Exon sequences
Seq C1 exon
GACAAGGAGCTGCGCGCCGTCTTCCTGCGGCTCTTTGCTCAGCTCCTGCAAGGCTACCGCTGGTGTCTGCACATGGTCCGCATCCACCCAGAGCCCGTCATCCGTTTCCATAAG
Seq A exon
CTTTCCTGGGCCAG
Seq C2 exon
CGCGGGCTGGTGGAGGATGATTTCCTGATGAAGGTGCTGGAGGGCATGGCCTTTGCAGGCTTCGTGTCCGAGCGCGGGGTCCCCTACCGCCCTACAGACCTGTTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021337-13-20,13-19,13-18-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=FE(52.9=100)
A:
NA
C2:
PF0345514=dDENN=PD(42.9=69.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGCTCAGCTCCTGCAAG
R:
GAAATCATCCTCCACCAGCCC
Band lengths:
107-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development