BtaALTA0026062-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000021337 | SBF1
Description
SET binding factor 1 [Source:HGNC Symbol;Acc:HGNC:10542]
Coordinates
chr5:119984486-119984937:-
Coord C1 exon
chr5:119984833-119984937
Coord A exon
chr5:119984632-119984635
Coord C2 exon
chr5:119984486-119984631
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
CAGACGGCTTCTGTCCGCAGGAA
3' ss Score
8.94
Exon sequences
Seq C1 exon
AAACGGAACCCGCCCACCTTCTTCGTCGCTGTCCTCACCGACATCAACTCCGAGCGGCACTACTGTGCCTGCTTATGCTTCTGGGAGCCTGTGGAGCCCACGCAG
Seq A exon
GAAG
Seq C2 exon
AGCTGTGTGCCCGGGACGCCGCCGAGCGGGATGAGGAGGCCAATGAGGGGGGCCCGGGGGCACTGCCGCCCCCCACGCCCAGCCCGCCCGGCCAGCTGTTTGCTCCAAAGACGCTGGTGTTGGTGTCACGGCTGGACCACGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021337-3-3,3-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.553
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PD(43.5=77.1)
A:
NA
C2:
PF0214116=DENN=PU(9.8=34.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCCTGCTTATGCTTCTGG
R:
CCCCTCATTGGCCTCCTCATC
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development