BtaALTA0026112-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000015553 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr11:95940576-95941602:-
Coord C1 exon
chr11:95941530-95941602
Coord A exon
NA
Coord C2 exon
chr11:95940576-95940719
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
ATCTTCCTAACCGTGAACAGTGC
3' ss Score
5.3
Exon sequences
Seq C1 exon
AATTTCACAAACTTATTTGGACAGCCACTAGTCTGCTTGCTTTCTCCTACAGCCTACCCAAAAGCTTTACAAG
Seq A exon
NA
Seq C2 exon
TGCTGGTGTCTCTCTGTGGGGGATGGCATTTTACTGCTACTTCCCAGCCAGAAGTCCTGTCTGCTGATATAGTTTGACACAGGAGGTGATGGTCAGCATTTGAATGCCCGAGAGAAGCTGGAGACTTTTCACCGTTGTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015553-22-17,22-16-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(4.8=100)
A:
NA
C2:
PF120703=DUF3550=PD(3.1=50.0)
Main Inclusion Isoform:
ENSBTAT00000020665fB6145
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGCTTTCTCCTACAGCC
R:
ATGCTGACCATCACCTCCTGT
Band lengths:
139-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development