BtaALTA0026246-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000020573 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr15:44125124-44125776:+
Coord C1 exon
chr15:44125124-44125246
Coord A exon
chr15:44125660-44125662
Coord C2 exon
chr15:44125663-44125776
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CTGCATTTTGTCCTGTCTAGAAG
3' ss Score
7.11
Exon sequences
Seq C1 exon
ACACCAACGAGTGCAGCGTCAACAACGGAGGCTGTCAGCAGGTCTGTGTGAACACTGTGGGCAGCTACGAATGCCACTGCCACTCTGGGTACAAGCTCCACTGGAATAAAAAGGACTGTGTGG
Seq A exon
AAG
Seq C2 exon
TGAAGGGGGGCCTGCCCACTAGCCTGTCACCCCACGTGTCCCTGCAGTGCGGTAAAAGTGGTGGAGGAGACAGGTGCTTCCTCAGATGTCACTCTGGCATTCACCTCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020573-20-14,20-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTACAAGCTCCACTGGAA
R:
CTCCTCCACCACTTTTACCGC
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development