RnoALTA0035308-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013123 | Scube2
Description
signal peptide, CUB domain and EGF like domain containing 2 [Source:RGD Symbol;Acc:1563998]
Coordinates
chr1:174461373-174462031:-
Coord C1 exon
chr1:174461909-174462031
Coord A exon
chr1:174461487-174461489
Coord C2 exon
chr1:174461373-174461486
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CTGTGTTTTGTCCTGTCTAGAAG
3' ss Score
8.97
Exon sequences
Seq C1 exon
ACACCAACGAGTGCAGCGTCAACAACGGAGGCTGCCAGCAAGTTTGCGTCAACACAGTGGGTGGCTATGAGTGCCAGTGTCATCCAGGGTACAAGCTCCACTGGAATAAAAAAGACTGTGTGG
Seq A exon
AAG
Seq C2 exon
TAAAGGGCGTCCTGCCCACTAGCACGACACCCCGTGTGTCCCTGCACTGTGGTAAAAGTGGTGGAGGAGACAGGTGCTTCCTAAGATGCCATTCTGGCATTCACCTCTCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013123-12-13,12-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTACAAGCTCCACTGGAA
R:
TTTACCACAGTGCAGGGACAC
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]