BtaALTA0026371-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000000854 | SEC16B
Description
SEC16 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr16:60783179-60786615:-
Coord C1 exon
chr16:60786471-60786615
Coord A exon
NA
Coord C2 exon
chr16:60783179-60783330
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
CACCTGTATTGGTTGGTCAGAGG
3' ss Score
1.32
Exon sequences
Seq C1 exon
CTATCACTGATGGAGGAGTCCAACCTTCTCTGGCAGCATGAGTCTGGTCTCACCTCCAGCAGCTACGAGCTCAGTCAGTACATGGCAGATGCTTCCGAGCTCTGTGACCCCATGACTTCAGCCGTTTGGAGCCCAGTTCAGGCTG
Seq A exon
NA
Seq C2 exon
AGGACATCTCAGCAGCTGGTCCCAAGGAACCCATGAAGTTCTATGTCCCTCACATGCCTGTGAGTTTTGGGCCAGGAGGTCAGCTGGTGTGTGTGAGTCCCAGCTCTCCCAGTGATGGACAGACAGCCCTTGTTGAACTGCACAGCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000854-9-11,9-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.392
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF129322=Sec16=PU(33.3=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCATGAGTCTGGTCTCAC
R:
CAAGGGCTGTCTGTCCATCAC
Band lengths:
245-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development