BtaALTA0026718-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000015979 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:20880039-20880422:-
Coord C1 exon
chr19:20880320-20880422
Coord A exon
NA
Coord C2 exon
chr19:20880039-20880139
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
3' ss Seq
GAAGTCTCTTTCCTTTGCAGGAG
3' ss Score
10.19
Exon sequences
Seq C1 exon
GCTCCAGGGGAACAGCCCCCTGCAGCTGCCCCGGACACGACCCCGCCCTTATGACCGCATCACCGTGGAGTCAGCGTTTGATAATCCAACTTACGAGACTGGA
Seq A exon
NA
Seq C2 exon
GAGACGAGAGAATATGAAGTCTCCATCTAGGTGGGGCGGCCTGGGGAAGCCGGCTCCGCCCTGCATCCCAGTCCAGCAGCAGAGCTCCCAGCTTCCTGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015979-19-25,19-24-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGACCCCGCCCTTATGA
R:
GCCCCACCTAGATGGAGACTT
Band lengths:
105-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development