DreALTA0024249-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000079414 | sez6b
Description
seizure related 6 homolog b [Source:ZFIN;Acc:ZDB-GENE-110628-3]
Coordinates
chr15:24605483-24608824:+
Coord C1 exon
chr15:24605483-24605491
Coord A exon
NA
Coord C2 exon
chr15:24608724-24608824
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTTGTTTGTCTGATCCGCAGGAC
3' ss Score
9.42
Exon sequences
Seq C1 exon
AACAATGAG
Seq A exon
NA
Seq C2 exon
GACACGAGAGAATACGAAGTCTCCATTTAAATAAAACCACGCTTGTTTTAGCATGGAGGACCGCAAGCCTTTCTCTGCCTTGTGGAAGATCTCAGTTCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079414-19-24,19-23-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]