Special

MmuALTA0016221-1/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77791244-77791631:+
Coord C1 exon
chr11:77791244-77791346
Coord A exon
NA
Coord C2 exon
chr11:77791531-77791631
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
3' ss Seq
GCAGTCTCTTTCCTTTGCAGGAG
3' ss Score
10.64
Exon sequences
Seq C1 exon
ATTCCAGGGGAAAAGTCCCCTGCAACTTCCCCGAACTCATCCTCGCCCCTATAACCGCATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGACTGGA
Seq A exon
NA
Seq C2 exon
GAGACGAGAGAATATGAAGTTTCCATCTAGGTGGGAGCAGCCTGGGGATGCACACGCAGTCCTGCATCGCAGGCCAGCGGCAGGGCTCCCGGCTCTCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632-22-23,22-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref, Alt. Stop)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.157 A=NA C2=0.053
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000000646





     
                   









    
Main Skipping Isoform:
ENSMUSP00000091532





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr17:27282997-27282998 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr19:20880140-20880141 
Chicken
(galGal4)
chr19:5911398-5911399 
ALTERNATIVE
GgaALTA1028825-1/3
(SEZ6)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr15:24608722-24608723 
DreALTA0024249-1/2
(sez6b)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCATCCTCGCCCCTATAACCG

				
R: 
GCTGCTCCCACCTAGATGGAA

				
Band lengths: 
108-124

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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