MmuALTA0016221-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77791244-77791631:+
Coord C1 exon
chr11:77791244-77791346
Coord A exon
chr11:77791515-77791530
Coord C2 exon
chr11:77791531-77791631
Length
16 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
3' ss Seq
AAGTTTCCAACTCCCCGCAGTCT
3' ss Score
6.76
Exon sequences
Seq C1 exon
ATTCCAGGGGAAAAGTCCCCTGCAACTTCCCCGAACTCATCCTCGCCCCTATAACCGCATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGACTGGA
Seq A exon
TCTCTTTCCTTTGCAG
Seq C2 exon
GAGACGAGAGAATATGAAGTTTCCATCTAGGTGGGAGCAGCCTGGGGATGCACACGCAGTCCTGCATCGCAGGCCAGCGGCAGGGCTCCCGGCTCTCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632-22-23,22-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.157 A=NA C2=0.053
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCTCGCCCCTATAACCG
R:
GCTGCTCCCACCTAGATGGAA
Band lengths:
108-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: