GgaALTA1028825-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5911297-5912024:-
Coord C1 exon
chr19:5911922-5912024
Coord A exon
chr19:5911398-5911413
Coord C2 exon
chr19:5911297-5911397
Length
16 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGC
5' ss Score
5.07
3' ss Seq
GAGTGTCCAACCCCTCGCAGTCT
3' ss Score
5.03
Exon sequences
Seq C1 exon
GCTGCAGGGGAAGCCAGCCCTACAGCTGCCCCTTTCCGGATCCCACCCCTATGATCACATCACCGTGGAGTCAGCATTTGACAACCCCACCTATGAGACAGGA
Seq A exon
TCTGTTTTCTTTGCAG
Seq C2 exon
GAAACGAGGGAATATGAGGTGTCCATCTAGGCGAGGGTGCAGCAGACCCCTCCCGGGATGCCCACGCCCGCCGGCCCTCGCCATGGTGCTGGGCACACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431-20-21,20-20,20-19-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCGGATCCCACCCCTAT
R:
CTCGCCTAGATGGACACCTCA
Band lengths:
107-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]