BtaALTA0027354-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000003773 | SLC25A13
Description
solute carrier family 25 (aspartate/glutamate carrier), member 13 [Source:HGNC Symbol;Acc:HGNC:10983]
Coordinates
chr4:13430636-13434161:-
Coord C1 exon
chr4:13434077-13434161
Coord A exon
chr4:13430721-13430723
Coord C2 exon
chr4:13430636-13430720
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CAATTCCTGTGTACGCAAAGAAG
3' ss Score
-2.05
Exon sequences
Seq C1 exon
ACGCATGACCTTGGCCGACATCGAACGGATTGCTCCTCTGGAGGAGGGGACTCTGCCCTTCAACTTGGCTGAAGCCCAGAGGCAG
Seq A exon
AAG
Seq C2 exon
AAGGCATCAGTTGATTCATCTCGACCAATTCTCCTGCAGATTGCAGAGTCAGCCTACAGGTTTGGTCTCGGTTCTATTGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003773-11-18,11-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0015322=Mito_carr=PU(14.3=46.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTTCAACTTGGCTGAAG
R:
ACCTGTAGGCTGACTCTGCAA
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development