RnoALTA0036726-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000009957 | Slc25a13
Description
solute carrier family 25 member 13 [Source:RGD Symbol;Acc:1565889]
Coordinates
chr4:31646709-31650641:-
Coord C1 exon
chr4:31650557-31650641
Coord A exon
chr4:31646768-31646770
Coord C2 exon
chr4:31646709-31646767
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTGCTACGGCACACATGAAGCAG
3' ss Score
-2.98
Exon sequences
Seq C1 exon
GCGCATGACCTTAGCAGACATTGAGCGGATTGCCCCTCTAGAGGAAGGAATGTTGCCCTTCAACTTGGCTGAGGCCCAGAGGCAG
Seq A exon
CAG
Seq C2 exon
AAGGCCTCGGGTGATGCTGCTCGGCCCTTTCTTCTACAGCTGGCAGAGTCGGCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009957-22-15,22-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0015322=Mito_carr=PU(14.3=46.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAAGGAATGTTGCCCTT
R:
CGACTCTGCCAGCTGTAGAAG
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]