BtaALTA0027510-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000046379 | SLC34A3
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 3 [Source:HGNC Symbol;Acc:HGNC:20305]
Coordinates
chr11:105869570-105869982:-
Coord C1 exon
chr11:105869898-105869982
Coord A exon
NA
Coord C2 exon
chr11:105869570-105869659
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
GCTGACCCCAACCCCTGCAGGGA
3' ss Score
5.94
Exon sequences
Seq C1 exon
ATGCCGCATCCCCTCACCGGGGGCCCGGCCCCTCCCACCCCTCTGGACACAGTTGGCCTGGTAGACCAGAGGCTGGGAGACGCAG
Seq A exon
NA
Seq C2 exon
GGATCTCTGGTTCTGCCTCCATCCTGGAAGACAGAGACATGGACCCCTGGGCCCTCCCTCAGCTGAAGGACACCGGACAGGCCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046379-1-3,1-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.552 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCACCCCTCTGGACAC
R:
GTCCGGTGTCCTTCAGCTGAG
Band lengths:
132-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development