MmuALTA0016645-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000006469 | Slc34a3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:MGI Symbol;Acc:MGI:2159410]
Coordinates
chr2:25088488-25088946:-
Coord C1 exon
chr2:25088823-25088946
Coord A exon
NA
Coord C2 exon
chr2:25088488-25088574
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTC
5' ss Score
6.49
3' ss Seq
ACCTGACCTGACCCCTGCAGGAA
3' ss Score
7.92
Exon sequences
Seq C1 exon
AGCTAGGATTGGGCCTGGGTCTTCCCCTTCTTGAAATCCATGCCGAATTCCCTCGCCGGTGGCCAGGTCCCCAACCCTACTCTGGATGCCTTTGACCTGGTGGACCGGAGTCTGAGAAATGCAG
Seq A exon
NA
Seq C2 exon
GAATCTCCGGTTCCATTCCAGGCTTGGAAGAGGGAGGTACAGATCCCTGGACCTTCTCTCCGCTGAAGAACGCTGACCAACTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006469-2-6,2-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCCTACTCTGGATGCCT
R:
GTCCAGGGATCTGTACCTCCC
Band lengths:
106-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: