BtaALTA0028677-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000008676 | SRRM4
Description
serine/arginine repetitive matrix 4 [Source:HGNC Symbol;Acc:HGNC:29389]
Coordinates
chr17:58461043-58464098:-
Coord C1 exon
chr17:58464000-58464098
Coord A exon
NA
Coord C2 exon
chr17:58461043-58461199
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TCTCTCTGCTCTGCATCCAGGCA
3' ss Score
8.63
Exon sequences
Seq C1 exon
ATCGCGAAGCCGGCCCCGAAAATCTCGCCGCCGCCGCCATCACCACTGCCCCTCACGGTCCCAGAGCTCAGAGTCCCGCTCCTCAAGCTGCGACAGCAG
Seq A exon
NA
Seq C2 exon
GCACCGTGGCCGGTCCCCCGAGGGAGGGCGGAAGTCCCGTCGAAGGCACTCTCGCCGCTGCTCCAAGACCCTCTGCAAGGCCAGCCCAGAGGCCCGGTCCAGCCCCCAACCCAGCCAGCCCCTCCAGATGCTCAGCTTCCTGTCAGCCAGGGGTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008676-5-6,5-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.962
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGAGTCCCGCTCCTCAAG
R:
CTTGCAGAGGGTCTTGGAGC
Band lengths:
112-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development