GgaALTA0003845-2/2 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C6U3]
Coordinates
chr15:9738566-9739730:-
Coord C1 exon
chr15:9739638-9739730
Coord A exon
chr15:9738711-9738716
Coord C2 exon
chr15:9738566-9738710
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
CTTCTGCATGTTTTCTGGAGGCA
3' ss Score
-2.63
Exon sequences
Seq C1 exon
CTCCCGTGGGCGCACCCGGAAAGCTCACCGCCACCGCCGCTGCCACTCTCGCTCAGAGAGCTCTGACTCCTATTCCCCGAGCTGCCGGAGCAG
Seq A exon
GCACAG
Seq C2 exon
AGCCAGGTCTCGGGAGGAAGGGCGTAAAGCACGGCGGAGACGCTCCCAGCGCCATGCAAAAGTCCCAGCAAAGAGAAGCTCCTCTGCAGAGGTTCAGGCCAGCCAAACCCTCCCACTGCACAGCTTCCTGTCTCCTAAGGAAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007388-7-9,7-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCCTATTCCCCGAGCTG
R:
TTTGCTGGGACTTTTGCATGG
Band lengths:
102-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]