GgaALTA0003845-1/2 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C6U3]
Coordinates
chr15:9738566-9739730:-
Coord C1 exon
chr15:9739638-9739730
Coord A exon
NA
Coord C2 exon
chr15:9738566-9738710
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
CATGTTTTCTGGAGGCACAGAGC
3' ss Score
-4.26
Exon sequences
Seq C1 exon
CTCCCGTGGGCGCACCCGGAAAGCTCACCGCCACCGCCGCTGCCACTCTCGCTCAGAGAGCTCTGACTCCTATTCCCCGAGCTGCCGGAGCAG
Seq A exon
NA
Seq C2 exon
AGCCAGGTCTCGGGAGGAAGGGCGTAAAGCACGGCGGAGACGCTCCCAGCGCCATGCAAAAGTCCCAGCAAAGAGAAGCTCCTCTGCAGAGGTTCAGGCCAGCCAAACCCTCCCACTGCACAGCTTCCTGTCTCCTAAGGAAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007388-7-9,7-8-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCCTATTCCCCGAGCTG
R:
TTTGCTGGGACTTTTGCATGG
Band lengths:
102-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]