BtaALTA0028818-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67694790-67698563:+
Coord C1 exon
chr5:67694790-67694885
Coord A exon
chr5:67698516-67698540
Coord C2 exon
chr5:67698541-67698563
Length
25 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TCTTGCACGAAATGAATAAGGAA
3' ss Score
-3.36
Exon sequences
Seq C1 exon
GCAACCTGTCAGCTTACTTCCTCCGGCATCTGGAGTTGTGTTTGCCAAGAGGGCTATGAAGGAGACGGCCTTCTGTGCTATGGAAATGCTGCAGTG
Seq A exon
GAATTGTCCTTTCTCTCCGCTGCAG
Seq C2 exon
CTGTATTTAACCAGTGGATAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010-27-30,27-29-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(67.6=78.1)
A:
NA
C2:
PF0246917=Fasciclin=PU(8.0=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development