MmuALTA0017407-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86387142-86389437:-
Coord C1 exon
chr10:86389342-86389437
Coord A exon
chr10:86387168-86387189
Coord C2 exon
chr10:86387142-86387167
Length
22 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
CCTTGGAACAAATGAATAAGGAA
3' ss Score
-3.47
Exon sequences
Seq C1 exon
GCCACCTGTCAATATACTTTGTCTGGTGTTTGGAGCTGTGTTTGCCAAGAGGGCTATGAAGGAAATGGTGTCCTGTGCTATGGAAATGTGCTCATG
Seq A exon
GAACTGTCGTTTCTCTCTGAAG
Seq C2 exon
CAGCTGTATTTTACCAGTGGATCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-28-31,28-30-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(67.6=78.1)
A:
NA
C2:
PF0246917=Fasciclin=PU(8.0=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGGTGTTTGGAGCTGTG
R:
TTGATCCACTGGTAAAATACAGCTG
Band lengths:
102-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: