BtaALTA0030034-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000018035 | TGFBR1
Description
Bos taurus transforming growth factor, beta receptor 1 (TGFBR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174621]
Coordinates
chr8:64601896-64605910:+
Coord C1 exon
chr8:64601896-64602141
Coord A exon
NA
Coord C2 exon
chr8:64605680-64605910
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CATTTGAGGCCCTTTTACAGGAA
3' ss Score
4.14
Exon sequences
Seq C1 exon
CATTACAGTGTTTCTGCCACCTTTGTACAAAAGACAATTTTACTTGTGTCACAGATGGGCTTTGCTTTGTCTCTGTCACAGAGACCACAGACAAAGTTATACATAATAGCATGTGTATAGCTGAAATTGACCTAATTCCACGAGACAGGCCATTTGTATGTGCACCATCTTCAAAAACTGGGTCTATAACTACAACATATTGCTGCAACCAGGACCACTGCAATAAAATAGAACTTCCAACTGTTG
Seq A exon
NA
Seq C2 exon
GAAAGCCATCATCTGGCCTTGGTCCTGTTGAACTGGCAGCTGTCATTGCTGGACCAGTCTGCTTTGTCTGTATCTCACTCATGTTGATGGTCTATATTTGCCATAACCGCACTGTCATTCACCATCGAGTGCCAAATGAAGAGGATCCCTCGTTAGATCGCCCTTTTATTTCAGAGGGTACAACGTTAAAAGATTTAATTTACGACATGACAACATCAGGTTCTGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018035-3-3,3-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=97.6)
A:
NA
C2:
PF085157=TGF_beta_GS=PU(58.6=21.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGCTGCAACCAGGACCAC
R:
TGACAGCTGCCAGTTCAACAG
Band lengths:
94-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development