GgaALTA1010148-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000012617 | ChALK5
Description
TGF-beta receptor type-1 precursor [Source:RefSeq peptide;Acc:NP_989577]
Coordinates
chr2:56039576-56040641:+
Coord C1 exon
chr2:56039576-56039827
Coord A exon
NA
Coord C2 exon
chr2:56040411-56040641
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
ACCATCAGGTCCTACTCCAGGAA
3' ss Score
3.88
Exon sequences
Seq C1 exon
CATTACAATGTTACTGCCATCTATGCACAAAGGACAACTTTACCTGTGTGACAGATGGGCTTTGTTTTACCTCTGTAACACGGACTGCAGATAGAGTCATACGCAATAGCATGTGTATAGCAGAAATTGATCTGATTCCTCGAGACAGGCCATTTATTTGTGCACCATCCTTCAGAGATGGAGTTACTACTTTGCCTCATTGCTGTGACAGAGACCACTGCAATAAAATAGAACTTCCAATTCCAACACCAG
Seq A exon
NA
Seq C2 exon
GAAGACCAGCTTCTAGTCTAGGACCTGTGGAACTGGCAGCTGTTATTGCTGGACCTGTCTGCTTTGTCTGCATTTCATTGATGCTGATTCTGTATCTTTGTCATAACCGTACTGTAATTCATCATCGTGTGCCAAGTGAAGAAGATCCTTCATTGGATCGTCCCTTTATATCTGAAGGAACTACTTTGAAGGATTTAATTTATGATATGACAACTTCAGGCTCTGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012617-13-5,13-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=NA C2=0.159
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=95.3)
A:
NA
C2:
PF085157=TGF_beta_GS=PU(58.6=20.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCATTGCTGTGACAGAG
R:
GCCAGTTCCACAGGTCCTAGA
Band lengths:
97-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]