BtaALTA0030225-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000015713 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr19:47556655-47558701:+
Coord C1 exon
chr19:47556655-47556795
Coord A exon
chr19:47558616-47558618
Coord C2 exon
chr19:47558619-47558701
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ACCTACTTTTTGTTTTTCAGTAG
3' ss Score
8.46
Exon sequences
Seq C1 exon
GGGGGGTTGCGGCGCTCAGGAGAGGCCCCGGCTCCGCCCCGGGCCTGCCCAAGGGGAGAGCAGAGCGGTCCGCAGCCGGGTCGGGTCGGGGCCCCTCCCGGGAGGAGCGTGGAGCGGCGGCGGCGGCGACAGCGGCGGCAG
Seq A exon
TAG
Seq C2 exon
AAATGATGGAAGAATTGCATAGCCTGGACCCCCGACGGCAGGAATTATTAGAGGCCAGGTTTACTGGAGTTGGTGTTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015713-2-1,2-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAGCAGAGCGGTCC
R:
TCCAGGCTATGCAATTCTTCCA
Band lengths:
116-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development