HsaALTA0008683-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000146872 | TLK2
Description
tousled like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr17:62479025-62481206:+
Coord C1 exon
chr17:62479025-62479290
Coord A exon
chr17:62481121-62481123
Coord C2 exon
chr17:62481124-62481206
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCCTACTTTTTCTTTTTCAGCAG
3' ss Score
9.99
Exon sequences
Seq C1 exon
GCGGCCGCCCGGGCCCGGGCCCGCGTCGGGCGCCTGGCTCTGTACGCGAGCCCGGGGATCTGCGGCCTTCGTGCCCCCCCTCCCCCGCCCGCCCTCTCGTGGAGCCCGGCGCCGGCGGCGGCTGCCCGGGCGGGGGGTTGCGGCGCTCAGGAGAGGCCCCGGCTCCGCCCCGGGCCTGCCCAGGGGGAGAGCGGAGCGGTCCGCAGCCGGGTCGGGTCGGGGCCCCTCCCGGGAGGAGCGTGGAGCGGCGGCGGCGGCGGCGGCAG
Seq A exon
CAG
Seq C2 exon
AAATGATGGAAGAATTGCATAGCCTGGACCCACGACGGCAGGAATTATTGGAGGCCAGGTTTACTGGAGTAGGTGTTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146872-7-14,7-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.897
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCGGCGCTCAGGAGAG
R:
CCAGGCTATGCAATTCTTCCA
Band lengths:
156-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development