HsaEX7009499 @ hg38
Exon Skipping
Gene
ENSG00000146872 | TLK2
Description
tousled like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr17:62470959-62481206:+
Coord C1 exon
chr17:62470959-62471078
Coord A exon
chr17:62477496-62477697
Coord C2 exon
chr17:62481124-62481206
Length
202 bp
Sequences
Splice sites
3' ss Seq
ATCCTGTGTCGTTTCGGCAGGTC
3' ss Score
9.38
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
AGTTCAGCCAGGTGCAGGCACTGTCATGTTCATGGCCACCAGGCATCTGCCAAGCACCAGGCTCTGTGCTGCCCACTTTACACAGATGGTCTCATTTGGCCTTGATGACAGCCTGTGGAG
Seq A exon
GTCTGTGTTCTGTTAAAATATGGAAGAATTAAGAGAAGAACGAAGAAATAAGGGCAGAAACTCCACTGGGGAGTACTTGTCTAACCCTGAAAAAGTTCAAGGCTGTTGTTCAAGGTCTGAATTTTTCCCTTGAGATTTGCTTGTAGTCCTTAAAGTCATCTTCAGACATCTGATCAAGGCAGCATCCGCGGAAAATTATAAG
Seq C2 exon
AAATGATGGAAGAATTGCATAGCCTGGACCCACGACGGCAGGAATTATTGGAGGCCAGGTTTACTGGAGTAGGTGTTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146872-'1-14,'1-5,4-14=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.954
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAAGTGTACTGTGGAGGTG
R:
ACTAACACCTACTCCAGTAAACCTG
Band lengths:
181-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains