BtaALTA0030934-3/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000003256 | TOMM34
Description
translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:HGNC:15746]
Coordinates
chr13:74069125-74070285:-
Coord C1 exon
chr13:74070159-74070285
Coord A exon
chr13:74069226-74069258
Coord C2 exon
chr13:74069125-74069225
Length
33 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
GCCTCTCTCTCTCCTCTCAGGAC
3' ss Score
12.92
Exon sequences
Seq C1 exon
GGCACTCTGCCATCTGGAGCTGAAGCAGTTCCAGGAGGCGGTAAAGGACTGCACAGAAGCCCTCAGGCTGGATGGAAAGAACGTGAAGGCGTTCTACCGCCGGGCTCAAGCCTACAAGGCTCTCAAG
Seq A exon
GACTACAGGTCCTCATAGCCTCTCTCTCATCAG
Seq C2 exon
GACTTCAGATCCAGCTTTGCAGACATCGACAGTCTCCTGCAGATAGAGCCTAGGAATGGCCCTGCGCAGAAGTTGCGGCAGGAGGTTAACCGGAGCTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003256-10-13,10-12,10-11,10-10-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.265
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(36.8=58.1),PF148531=Fis1_TPR_C=PU(28.6=32.6)
A:
NA
C2:
PF148531=Fis1_TPR_C=PD(67.3=94.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGGATGGAAAGAACGTG
R:
CAGGGCCATTCCTAGGCTCTA
Band lengths:
127-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development