BtaINT0151421 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003256 | TOMM34
Description
translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:HGNC:15746]
Coordinates
chr13:74068198-74070285:-
Coord C1 exon
chr13:74070159-74070285
Coord A exon
chr13:74069226-74070158
Coord C2 exon
chr13:74068198-74069225
Length
933 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CATAGCCTCTCTCTCATCAGGAC
3' ss Score
9.77
Exon sequences
Seq C1 exon
GGCACTCTGCCATCTGGAGCTGAAGCAGTTCCAGGAGGCGGTAAAGGACTGCACAGAAGCCCTCAGGCTGGATGGAAAGAACGTGAAGGCGTTCTACCGCCGGGCTCAAGCCTACAAGGCTCTCAAG
Seq A exon
GTAAAGAGATCCTGTCCAGAGGCACCAAAGAGCCACAACCAGTTGTGCCCATGGTGGCACTTTCAGAGCATGGTCCAGGTGAGGTGGGGCCTGCCACGTCCCTCCTTGTCCAGGGGCCCCAGGTGCTCCTGACAGGCCTCCAGCCTGGGGTGCAGAAAGCCAGTTCGGCAGTGGTCCCCAACCCCGCCTGGTCTCCCGGGCCCAGGCTTCATCCCCCCAGTGTCTTCTCTCTCAGGACTGCAGGTCCCCACAGCCTCTTCTTCTCTCGGGACTACAGGTCCCCACAGCCTCTCTCCCCTCTCAGGACTACACGTCCCCACAGCCTCTTTCTCCTCTCAGGACTGCAGGTCCCCACAGCCTCTCTCCCCTCTCAGGACTACAGGTCCCCACAGCCTCTTTCTTCTCTCAGGACTGCAGGTCCCCACAGCCTCTCTCTCCTGTCAGGACTGCAGGTCCCCACAGCCCCCCTCTCTCAGGACTGCAGGTCCCCACAGCCTCTCTCTCCTCTCAGGACTGCAGGTCCCCACAGCCCCTCTCTCTCAGGACTGCAGGTCCCCACAGCCTCTCTCCTCTCAGGACTGCAGGTCCCCACAGCCTCTCTCTCCTCTCAGGACTGCAGGTCCCCACAGCCTCTCCTCTCAGGACTACAGGTCCCCACAGCCTCTTTTTTCTCTCAGGACTACAGGTCCCCACAGCCTCTCTGTCCTCTCGGGACTGCAGGTCCCCACAGCCTCTTTCTCCTCTCAGGACTGCAGGTCCCCACAGCCTCTTTCTCAGCCTCTTTCTTCTCTCAGGACTGCAGGTCCCCACAGCCTCTCTGTCCTCTTGGGACTACAGGTCCCCACAGCCTCTTTCTCCTCTTGGGACTACAGTACCCACAGCCTCTCTCTCTCCTCTCAGGACTACAGGTCCTCATAGCCTCTCTCTCATCAG
Seq C2 exon
GACTTCAGATCCAGCTTTGCAGACATCGACAGTCTCCTGCAGATAGAGCCTAGGAATGGCCCTGCGCAGAAGTTGCGGCAGGAGGTTAACCGGAGCTTAAACTAAAATCCCTGAAGGGCAGCAGGACACCTGTCTGCCTGAGCACCTTATTCTGTGCCTGCTCCTGGATCTGGCGGGCCCGAGTGGGCTCCGAAGCCCCCTCCTCTCCCCCAGAGACGTGATGGCCTCCCACCCCTCAGGAGGCTCTGCCTGTTCACATTAAGCTCAGTGTAGTCAGAAAGCAGACGTTTTGTTGGCAAAGTCTCCCCCTGTTCTGCACTCCCCTGTGCTGTGGACAGCGAGCAGGTCACAGCAACGGGTGCTTGTCAGCAGCATGCTCAGCCTGGTCTCTGCCCAGATGCTCCAGACCCACTGCTGCCCTTCCAGTCACCAGGTCCTGTCACCCTGATCCATCTGGGTGCTTAAAAAGCTGCCAGTCCCATGGGACACAGGCTGGCGTGGAAAGGAAGGAGGACTGGGAAACCCTGGCCCGCCTACACCCATGGCAGCCAGCTGAGCTGGTTCTCTAAGGCTGCCGACCCCTTCCCTGTCCTTGGCACGGCACTCCATGTTCTGAGCCCCAGTGCCTTTTGGCCGAGCCTCCCATGACAAGAATGCAGAACCTGTTCCCTCGGCCAGCGTTTGTCTGTGGCTCTGCGCTGTTGTCTCCCACATAAAGATTCCTAAGTTCTTTCAAGAGCCCAGAGGTGTGGCTGCTGCTCCTGAAGGTGGGATGGGGAGAAACCTCCTTGAAGTCCGTGTCCTTCCCTTCCCGGCAGGGACTTGCCTTTTGACTCCCACAGTGGCCCCACTAGGCTTCTTAGTTCTTTGTAATACGTTGAAGTTAATTTGAACTGAATAGACTGACTTTTGTTGAACTGCAAGTTTAAGCTGCGTTAACATCATCTACATGAATGTTGTACTTTGTGGTTCAGCTTTGGATCACTTTGGAACTTTGCGATAATAAAAAACTGGTTATGGAGCATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003256:ENSBTAT00000004220:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.265
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(36.8=58.1),PF148531=Fis1_TPR_C=PU(28.6=32.6)
A:
NA
C2:
PF148531=Fis1_TPR_C=PD(67.3=94.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGCCATCTGGAGCTGAA
R:
CCATCACGTCTCTGGGGGAG
Band lengths:
348-1281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development