HsaINT0170805 @ hg19
Intron Retention
Gene
ENSG00000025772 | TOMM34
Description
translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:15746]
Coordinates
chr20:43570771-43572220:-
Coord C1 exon
chr20:43572094-43572220
Coord A exon
chr20:43571855-43572093
Coord C2 exon
chr20:43570771-43571854
Length
239 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
CCTGTCTTTTCTTCTATTAGGAC
3' ss Score
10.86
Exon sequences
Seq C1 exon
AGCACTCTGCTATTTGGTCCTGAAGCAGTACACAGAAGCAGTGAAGGACTGCACAGAAGCCCTCAAGCTGGATGGAAAGAACGTGAAGGCATTCTACAGACGGGCTCAAGCCCACAAAGCACTCAAG
Seq A exon
GTAAAAAAAAATCCTGGCCAAAAGGTCCCAACATAGCTACAGAGATTTATGCCAGTGTCACCATTTACAGGGTGTAGCCAAGCTGAGACAATATCTGCAGCTTTTCCTTCTCATCCTGGGCCCAGGATAACTCAGAGCAGGCCTGTGGGCTGGGGTTTGAAAACACTTTGCTGCCTCAGCAGCTATCCCCACCCCAGTCCGGGAACCTTCCCCCACACTCCTGTCTTTTCTTCTATTAG
Seq C2 exon
GACTATAAATCCAGCTTTGCAGACATCAGCAACCTCCTACAGATTGAGCCTAGGAATGGTCCTGCACAGAAGTTGCGGCAGGAAGTGAAGCAGAACCTACACTAAAAACCCAACAGGGCAACTGGAACCCCTGCCTGACCTTACCCAGAGAAGCCATGGGCCACCTGCTCTGTGCCCGCTCCTGAAACCCAGCATGCCCCAAGTGAGCTCTGAAGCCCCCTCCTCAATCCCTTGATGGCCTCCCACCCTGTAAGAGGCTTTGCTTGTTCAAATTAAACTCAGTGTAGTCAAACACAGACATGGTTGTTGCACCAGAAAGGTCCCCACTAGAGCTAAGCGTGAAGCTGAAGCTCTGTCCCTATTCCCCCAGCCCAGCTAGCTGATCACACCAACAGATCCTCATCAGCAAAGCATTTGGCTTTGTCCTGCCCAAGTGGGCTGCAGACTGAGTGCTGCCCTTGTAGCTTCCCCAGACCCCAACTCACTGCAGTTCATCTGAACAACCTGAGCTCCTGGGCCGGGGTGGAAGGAGGGGGATAAACCTAAGGCCCTGATCCAAAGCAGCCTGTTGAGCTGGTTCTCCAGGGCTGCAGTCTCTCCAGGTGTACAGCTGCTGTCCCTGCCCTGTCCTGTCCTTGCACAGTCTCCTATGTCTGAGCCCCAGTGCCTTCTGTTCGGGCCCTCCTTTGGTGGGAAGGCAGAGCCCTGACCCTTGAATGGTTGTCCTTGACTCTGTGCTGCTGCCTTCTGCAGAGAGGCACCTAAGCTGTTTAAAGAGCCCAGTGATTGTGGCTGCTCCTCCTAGAGGTGGGAGGGGGCAAGAGGCCTCCTTGGTCAGTGTCCATGCTTTCTGGGCAGGGACTTGGTTTTTTGTTCCAACAGTGGCCTTCTCCGGGCTTCATAGTTCTTTGTAATATGTTGAAGTTAATTTGAATTGACTGATTTTGTTGAACTGTGTGTTTAAGCTGTTGCATTAAAAAGCTTTCTTCTACATCAATATCTGCTGTGCTTTCATTTATGCCTTTTCAGCTTTGCACCTGGAACTCTGTAGTAATAATAAAAGTTATTGCTTATTGGGCATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000025772-TOMM34:NM_006809:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.346
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(36.8=58.1),PF148531=Fis1_TPR_C=PU(27.1=30.2)
A:
NA
C2:
PF148531=Fis1_TPR_C=PD(68.8=94.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCCCTCAAGCTGGATG
R:
GATTGAGGAGGGGGCTTCAGA
Band lengths:
303-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)