GgaINT0010318 @ galGal3
Intron Retention
Gene
ENSGALG00000004110 | TOMM34
Description
NA
Coordinates
chr20:5191551-5192417:+
Coord C1 exon
chr20:5191551-5191677
Coord A exon
chr20:5191678-5191891
Coord C2 exon
chr20:5191892-5192417
Length
214 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
ACATTTAGAAATTCTTCTAGGAT
3' ss Score
4.16
Exon sequences
Seq C1 exon
AGCTCTCTGTTACTTGACTCTGAAGCAACACAAGGAAGCAGTCCAGGACTGCACAGAAGCTCTGCGATTAGATCCTAAAAACGTTAAGGCGTTCTACAGACGTGCTCAGGCACTTAAAGAACTGAAG
Seq A exon
GTAAGTCAGGAGTTTTTGACCAGTTTTCAGGTAGGAGCCTGTGAATGCCCTTTAGCACATGTTTTAGAACAGCTACACCGATGCTGGTGCTCAAAAGCAGCTCAAAAAGCAGTCCCAGGCTGTTGTGTTGCCTTGCCTCTGTCACTGGGTGTAGTTCTCCAGCAGGAGCCTTAGACTGCATTTTCAGTGCACTAACATTTAGAAATTCTTCTAG
Seq C2 exon
GATTACAAATCAAGTATTGCTGACATCAACAGCTTGTTGAAAATTGAACCAAAGAACACAGCTGCTCTGAGACTACTGCAAGAACTGAACAGAGCTTAGGGTAACCAGGCAACAAGGAAAGCTTTTTTTGCTGCAGAAGTAAGTTTCTCCCTTCTGATGCTGCAGGGACCAATCTGAATGCAGGATTGGTACTGAGATCTATCCTTAATTGCTGCTGAGATGTGACGTGTTCTGTGCCACCACAACGAACGTTAAGAATTGTTTGATACAGTTTGTGTATCTGGCTCTAAAATCATGCAAAGTTTTCATGCACTTGCCTGAGAGGGAGGCATATGGGTGAACTTCCCTGGCTGAAGTCGGTGTGCCTGTACCTGCTGGCCTCAGGGACTTGACCCACTTGGCCAAGATGCACACAAAGTGGCTGCTCTTTCTGAGAAGTTATAAACAGAGGGTTTTTTTAGTCCTTATTCAGGTGACAGTTTTGCTGCATTTGTGCTGCTATTAAGTAGGGTTGCTAAAGGACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004110:ENSGALT00000006537:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(61.8=100)
A:
NA
C2:
PF134141=TPR_11=PD(23.5=48.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTACAGACGTGCTCAGGC
R:
TTAACGTTCGTTGTGGTGGCA
Band lengths:
292-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]