MmuINT0163786 @ mm10
Intron Retention
Gene
ENSMUSG00000018322 | Tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:MGI Symbol;Acc:MGI:1914395]
Coordinates
chr2:164053540-164054827:-
Coord C1 exon
chr2:164054701-164054827
Coord A exon
chr2:164054508-164054700
Coord C2 exon
chr2:164053540-164054507
Length
193 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
ACTCTCTTTCTCTTTTATAGGAC
3' ss Score
12.8
Exon sequences
Seq C1 exon
AGCGCTCTGTCACCTGGTCCTGAAGCAGTACAAGGAGGCAGTAAAGGACTGCACAGAAGCCCTCAAGCTGGATGGGAAGAATGTAAAGGCGTTTTACAGACGGGCTCAAGCCTACAAGGCACTCAAG
Seq A exon
GTAAAGATTCCCCCGCAGACACCCAGGCCTAGCTAGAGCTTTCTGCGGGTGCTGACTCCAGTGTTCCTTCTCCCAAGCCCTGGAAAAGCTCCATGATCTTGCATCAGCAGCTGTCATCTGTCTGTCCATCCATTCCCCACCCCCGTTTTTGTGTCCTCTAGGTCCCCTCCCCAACTCTCTTTCTCTTTTATAG
Seq C2 exon
GACTATAAGTCAAGCCTTTCGGATATCAGCAGCCTCCTACAAATTGAACCCAGGAATGGCCCTGCACAGAAGTTACGGCAGGAAGTTAACCAGAACATGAACTAAACCGTAGAGGGCAACAGGGACCCTGAACTTGACCTTCCCAGAGAAGCCAGGGCCTCCCTTGCATCTGCCCCAATGCCCAGCATGCCGCCAAGGGAGTGCAAAATCAACCCCACTTTGACTCCTTGGAGAGGTAGCAGCCTTTCACCTGACACATTTTACTTGTTCAGATTAAGTCCATTACAGACAAGCACAGGACTCTTTTTTTTTTTCTTCTTTTTTTTTTCCAGAAAGGTCCCCACTAGAGGTTTTTGTTTTGTTTTATTTTTAATTTAAAAAAGCGTGACGCCAACAGCCCTGGCCTCATTCGCTTGCTTCTGCCTGGCCCTTGTCAACACAGTCCTTGGCAACTGTCCCTGACCCAGATATGCACAGACTGGGTGCCTGTGACTTCCTCTGCCGCCATAGCTCTGCAGTTCACCTGAGTGCTGACAGGCTAGAAGTGCTTGCTCGTCCGCAGCCACAGCGGCCTGTTGAGCTGGTTCTCCAAGGCTGCCTGCCATCTCCTCGAGGAGACAGCTGCTGTCTGCACCCTGTCCTTGACACAGTGTCCTGTGTTGAGCCCCAGTGCCTTTAGTCCAGGCCCTTTGTGGGAAGGCAGAGCCTAACCCTTGGAGGCTCTGTGTTGTTGCCTTCTGTCTGAGCTACCTACGATGTTCAAAGAGCCCAGATTCCTCCTGCAATGGGGAGAGAGGCCTCCTTGAGATTAGTGTCCCTCCAGTCTGAGCAGGAACTTAACCTTTTCCCCCATAGCAGCAGCCCCTCGGGCTCCTTTGTTTTGTTTTGTTTTGTTAATATGTTGGAGTTAATTGAACTGATTTTATTGAAGTGTGTGTTGCTGTTGCATTAAAAGGTTTTCTTCTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018322:ENSMUST00000109384:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.441
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(36.8=58.1),PF148531=Fis1_TPR_C=PU(27.1=30.2)
A:
NA
C2:
PF148531=Fis1_TPR_C=PD(68.8=94.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAAGCAGTACAAGGAGGC
R:
TGGGAAGGTCAAGTTCAGGGT
Band lengths:
254-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types