DreINT0166352 @ danRer10
Intron Retention
Gene
ENSDARG00000001557 | tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:ZFIN;Acc:ZDB-GENE-030131-2081]
Coordinates
chr6:52226683-52227614:-
Coord C1 exon
chr6:52227488-52227614
Coord A exon
chr6:52227408-52227487
Coord C2 exon
chr6:52226683-52227407
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
TTTTTTTTCTTCCCTCCTAGAAC
3' ss Score
11.2
Exon sequences
Seq C1 exon
AGCTCTCTGCTATCTAGCCTTAAAGATGTACAAAGATGCGATTAGGGACTGCGAGGAGGCTCTTCGATTGGATTCTGCCAACATTAAAGCCCTTTACAGACGTGCCCAGGCATACAAGGAACTCAAA
Seq A exon
GTAGGTGTATTTGTGAATGATTTGCTTAAAAGGTGAATAATTGATCTTTTTCTAAATGTTTTTTTTTTCTTCCCTCCTAG
Seq C2 exon
AACAAGAAGTCTTGTATTGAGGATCTCAATAGCGTACTCAAAATCGATCCAAACAACACAGCAGTGCAGAAGCTCCTGCAGGAAGTACAGAAGATGAAATGACTGCGAGTGTGATGTGGACACGAGGAAACTTCCCCCCCCAAGTGCCTCGTTGATTTGCCTTTCTGAGCTGCAACATTTGCTGTAAACTTCAGATATGCACATACATCATCATTTAAAACCCTTCACGTTAATATAGGAGCACTTGATTGGATGCTTTTTTTGCCATCGATACGCTATTGGCAGTCAAGTTTAAATTTGAAACTCCATCCTGTACTTGATTTGGTCAAACATGTTACCACTTAATTGATCTTTAATCAAACTTCAGCGTGATTTAGCATGTGATTTGTTTTTTTTAATGTGGAATTATTTGCACATTGAACTGAATGCCTCATTCATTTTAACCTATTTCTACTGTTTCTCTTTAGACTTGAAGTTCAAATAGGCAAATAGTTTTAGGGCTGTATTTTCAACAAAATCAGTTTTGCTTAACTTTGTTTCAAAAAATTAGTTGTGGGTTAATTCCTGTTGAAAACATTTAATGTTTATATACATTTGTAAAGTCTTGACACCTGTATTTATTGATGTTTCTTATGCCATTTTTTGCATCAAGATAATGTAAACGGGTCTGTATTTAAATAATGTGCTGTTATGCATCTGATAATAAAGGACAAGGTTCAGTATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001557:ENSDART00000001803:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(36.8=58.1),PF0051523=TPR_1=PU(41.2=32.6)
A:
NA
C2:
PF0051523=TPR_1=PD(52.9=52.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCCTTTACAGACGTGCC
R:
CTCGTGTCCACATCACACTCG
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]