RnoINT0154400 @ rn6
Intron Retention
Gene
ENSRNOG00000029799 | Tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:RGD Symbol;Acc:1309029]
Coordinates
chr3:160448298-160449554:-
Coord C1 exon
chr3:160449428-160449554
Coord A exon
chr3:160449237-160449427
Coord C2 exon
chr3:160448298-160449236
Length
191 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CAACTCTGTTTCTCTCACAGGAC
3' ss Score
11.06
Exon sequences
Seq C1 exon
AGCGCTATGTCATCTGGTCCTGAAGCAGTACAAGGAGGCAGAGAAGGACTGCACAGAAGCCCTCAAGCTGGATGGGAAGAATGTAAAGGCCTTTTACAGACGCGCTCAAGCCTACAAGGCACTCAAG
Seq A exon
GTAAAGACTCCCACCCAGACGCCAGGCACAGCCAGAGGTTTATGTGGGTGCTGGCTCCCGGTTTAGCACATGAAGCAGCACTTCTGTGTTCTTCTCCCAAGCCCTAGGAAAGCTCTGTTCTCCTACGTCAGCAGCTGTCCTCACACGCCCTGGTTCTCTAGGTTCCCTCCCCAACTCTGTTTCTCTCACAG
Seq C2 exon
GACTATAAATCCAGCCTTGCGGATATCAGCAGCCTTCTACAGATTGAACCCAGGAATGGCCCTGCACATAAGCTACGGCAGGAGGTTAACCAGAACATGAACTAAAACCATGAGAGAGCAACAGGAACCCTGAACTTGACCTTCCCAGAGAAGCTAGGACCTCCCCTGCATCTGCCCCTGATACCCAGCATGCCGCCAAGGGAGTGCAAAATCAACCCCACTTTGACTCCTTGGAGAGGTAGCAGCCTTCCACTGAGAAGTTTTGCTTGTTCAGATTAAGTCCATTACAGACAAGCACAGGACTCTTTCTCTTTTTTTCTAGAAAGGTCCCCATTAGAGTTTTAAAAAGTGTGAAGCCACAGCCCTGGCCTCATCCGCTTGCTTCTGCCTGGCCCTTGTTAACAAAGTACTTGGCAATTGTCCCAGACCCAGATGTGCCTCAGACTGAGTGCCCTGTGGCTTCCCAGACACCATGCCTCTGCAGTTCACCTGAGCTGGGAGAGTAGTGTTTGTTGACAGGCTAAAGTGCTTGCTCCCTACACCCACGCAGCCTGTTGAGCTGGTTCTCCAAGGCTGCCATCTCCCCAAGGGTACAGCTGCTATCTGCACCCTGTCCTTGGCACAGTGTCCTGTGTTGAGCCCCAGTGCCTTTAGTCCAGGCCCTTTGTGGGAAGGCAGAGCCTAACCCTTGGAGGCTCTGTGCTGTTGCCTTCTGTATGAGCTACCTACGATGTTCAAAGAGCCCATATTCCTCCTGGGATGGGGAGCGAGGCCTCCTTGAGATTAGTGTCCCTCCAGTCTGAGCAGGAACTTAACCCTTTCCCCCAACAGCAGCCCCTCAGGCTTCTTTGTTTTGTTTTGTTAATATGTTGAAGTTAATTGAACTGATTTTATTGAAGTGTGTGTGTTGTGGTTGCATTAAAAGGTTTTCTTCTGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029799:ENSRNOT00000040156:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.441
Domain overlap (PFAM):
C1:
PF0499812=RNA_pol_Rpb1_5=FE(26.4=100),PF134141=TPR_11=PD(36.8=58.1),PF148531=Fis1_TPR_C=PU(28.6=32.6)
A:
NA
C2:
PF0499812=RNA_pol_Rpb1_5=PD(20.1=91.4),PF148531=Fis1_TPR_C=PD(67.3=94.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCCCTCAAGCTGGATG
R:
CAGGGGAGGTCCTAGCTTCTC
Band lengths:
242-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]