BtaALTA0031101-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012622 | TRA2A
Description
Bos taurus transformer 2 alpha homolog (Drosophila) (TRA2A), mRNA. [Source:RefSeq mRNA;Acc:NM_001046380]
Coordinates
chr4:32251807-32252317:-
Coord C1 exon
chr4:32252192-32252317
Coord A exon
NA
Coord C2 exon
chr4:32251807-32251871
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TCTTTTATTTCCTACAGAAGAAG
3' ss Score
-1.35
Exon sequences
Seq C1 exon
CAGTGGTGGCGGCGGCGGCGGCGGCGGTGGTGGAGGTGGAGGAGGTGGCAGACGTCGAGATTCTTACTATGATCGAGGATATGATCGTGGGTACGACAGATATGAAGACTATGATTACCGGTACAG
Seq A exon
NA
Seq C2 exon
AAGATCACCTTCTCCTTATTACAGTCGATACAGATCACGATCAAGATCTCGATCCTACAGCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012622-15-13,15-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.698 A=NA C2=0.917
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTACGACAGATATGAAGACT
R:
TGGGCTGTAGGATCGAGATCT
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development